Thalassospira indica: DY252_05555
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Entry
DY252_05555 CDS
T05581
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tii
Thalassospira indica
Pathway
tii02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tii00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DY252_05555 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tii03021
]
DY252_05555 (rpoD)
Transcription machinery [BR:
tii03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DY252_05555 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
APP_E2
Motif
Other DBs
NCBI-ProteinID:
AXO13747
UniProt:
A0ABN5NHD9
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All DBs
Position
1158801..1160879
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AA seq
692 aa
AA seq
DB search
MSSKTSNAEEKKNSSENADGPLLDTYKSAIKKLIAKGKEKGHISVDELNAALPSEHFSSE
QIEDVMSNLNEMGINVIDGDEADDNDDSDDSEADPRGNISEDDVGRTDDPVRMYLREMGS
VELLSREGEIAIAKRIEAGRDMMIGGICESPLTIRAIVNWHDQLQAGELLLRDVIDLETT
YGGGPEAEIAAAEGDEEDTDVDPEADVESFESANDDDDEEAETETPEGITDDAEEEEDED
DESEESEGEDGESTGEREGDDDDDDENEQVNVSLSKMEEELTEQVLEKFELIAKTYEKLH
KAQEQRLVAMNKGEAVPAATEKRYNKLKNEMVDLMEDVHLNNFRIEELLDHLTGLNNRLL
GLEGKLLRFADRCKIKRPDFIKQYQGHELDPNWMERVGGLPGKGWKAFVERYPDEIANLR
EGVGGVSAEVGLPIGEFRRVYGVVNKGEREAGRAKKEMIEANLRLVISIAKKYTNRGLQF
LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN
KLVRTSRQMLHEIGREPTPEELAEKLQMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGD
FIEDKNAVQPLDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFS
VTRERIRQIEAKALRKLKHPSRSRKLRSFLDY
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctaagacttcgaacgctgaagagaaaaagaactcttctgaaaacgcagacgga
cctcttctcgatacatataagtcggccataaaaaagctcattgccaagggcaaggagaaa
ggccacatctcggtcgatgaattgaacgcggctctgccgtccgagcacttctcctcggag
cagatcgaagacgtgatgagcaatctcaacgagatgggcatcaatgtcatcgatggcgac
gaagccgacgacaatgacgacagcgatgattccgaagccgatccgcgtggcaacatctct
gaggatgatgttgggcggaccgatgatccggtgcgtatgtatcttcgcgaaatgggcagt
gttgaactgctgtcgcgcgaaggcgaaatcgccattgccaaacgtatcgaagccggtcgt
gacatgatgatcggcgggatttgtgaatccccgctgaccattcgtgcgattgtaaactgg
catgatcagcttcaggctggcgaacttctgctgcgtgacgtcattgaccttgaaaccacc
tatggcggtggcccggaagcggaaattgccgctgccgaaggcgatgaagaagacaccgac
gtcgatccagaggccgatgtcgaaagcttcgagtcggccaatgacgacgatgacgaagaa
gccgagaccgaaacccccgaaggcatcaccgacgatgccgaggaagaagaggacgaagac
gacgagtctgaggaatcagagggtgaagacggcgaaagcaccggtgaacgcgaaggcgat
gatgacgacgatgacgagaacgagcaggtcaacgtctctctttccaaaatggaagaggaa
ctgaccgagcaggttctcgagaagttcgagctgatcgccaagacctatgagaaattgcac
aaggcgcaggaacagcgtctggtcgcgatgaacaagggtgaagccgttccggctgcgacc
gaaaaacgctataacaagctcaagaacgagatggtcgacctcatggaagatgttcacctg
aacaacttccgtatcgaggaactgcttgaccatctgaccggtttgaacaaccgtctgctt
ggccttgaaggcaagcttctgcgctttgccgaccgttgcaagatcaaacgtcctgatttc
atcaaacagtatcaggggcatgaacttgacccgaactggatggaacgcgttggcggcctg
ccggggaagggctggaaggcgtttgttgaacgctatcccgacgaaatcgccaacctgcgc
gaaggcgttggtggcgtttcggccgaagttggccttccgattggcgaattccgccgcgtt
tacggcgtggtcaacaagggcgaacgcgaagcaggccgtgcgaagaaagagatgatcgag
gccaacctgcgtctcgtgatctcgatcgccaagaaatataccaaccgtggtcttcagttc
cttgaccttattcaggaaggcaatatcggcctgatgaaggcggtggacaagtttgagtac
cgccgtgggtacaagttctcgacctatgcgacctggtggatccgtcaggcgatcacgcgt
tctattgccgaccaggcccgtacgatccgtattccggttcacatgatagagaccatcaac
aagctggtgcgtacctcgcgccagatgttgcatgaaatcggccgtgaaccgaccccggaa
gagctggctgaaaagctgcagatgccgcttgagaaggtccgcaaggttctaaaaatcgcc
aaggagcctatctcgctcgaaactccgatcggggacgaggaagacagccatctgggcgat
ttcatcgaggacaagaacgccgttcagccgcttgatgcagcgatccaggccaacctgcgt
gaaacaaccacgcgtgttctggcatcgctcaccccgcgtgaagaacgtgttctgcgtatg
cgtttcgggatcggtatgaacaccgaccacaccctcgaagaggttggtcagcagttctct
gtgacccgcgaacgtatccgtcagatcgaggcaaaagcgctgcgcaagctcaagcatccg
tcgcgctcgcgcaaactgcgttcgttcctcgattattaa
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