Thalassospira indica: DY252_06350
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Entry
DY252_06350 CDS
T05581
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
tii
Thalassospira indica
Pathway
tii03420
Nucleotide excision repair
tii03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DY252_06350
03430 Mismatch repair
DY252_06350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tii03400
]
DY252_06350
Enzymes [BR:
tii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DY252_06350
DNA repair and recombination proteins [BR:
tii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DY252_06350
MMR (mismatch excision repair)
Other MMR factors
DY252_06350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_11
AAA_12
AAA_22
AAA_16
vATP-synt_AC39
DUF3553
TusA
Mg_chelatase
Motif
Other DBs
NCBI-ProteinID:
AXO16750
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All DBs
Position
1328900..1331257
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AA seq
785 aa
AA seq
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MDDPFEIDEFAASPEMRLADTPTPAYLDNLNAEQRDAVETLDGPLLVLAGAGTGKTRVLT
TRLAHLLETKAQTERLHPQQILAVTFTNRAAKEMQERVAQALGRPVEGWWLGTFHSLSAR
LLRRHADLIGLKSNFTILDSDDQVRLLKQIMDAEQIDPKKWPAKQLMGIIQRWKDKGLTP
ERVNESVEFANGGAKHLYKIYQERLKVLNACDFGDLLLHCLTLFQQHPEVLKQYQNTFRY
ILVDEYQDTNVAQYLWLRAMAMVHRNICCVGDDDQAIYSWRGAEVGNILRFESDFPGAKV
VRLEQNYRSTPHILAAASQLITFNDGRLGKELWTEIDTGDKVLVKGVWDGEAEARLIGED
IEALQRKGVGASQIAILVRAGFQTREFEERLITLGIPYRVVGGPRFYERQEIRDALAYIR
LVAQPDDSLAFERIVNVPKRGVGKASLQTLHQYSRDQAISLPAAARDLLDTEELKPKMRQ
SIGGLLGDFKRWREMLGNSSHVEVVETVLDESGYTDMWRTSKEIDAPGRLENLKELVSAI
GEFENLTSFLEHVSLVMENAQNDHEEKVTIMTLHAAKGLEFDYVFLPGWEEGVFPHQRAM
DENGVKGLEEERRLAYVGITRARKRATICYAANRRIYNQWQSALPSRFVDELPDEHIERS
SDTGLGGHGGNHSPGAWGADDWMKMPSWASDSSTPSRNPVSGAGERKFASSGWQDRVRKN
VIDVKPDGETSYSTSSNSSKYKVGDTVRHRKFGSGTVRAVDGNKLEIHFESVGTKKVVDS
FILPG
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggatgatcccttcgaaattgatgaattcgccgccagccccgaaatgcgtctggccgat
acaccgaccccggcatatctcgacaatctgaatgccgagcagcgcgatgctgtcgaaacg
ctggatgggccgctgttggtgcttgcaggtgccggaaccgggaaaacacgtgttttgacc
acgcgtctggcgcatcttctggaaaccaaggcacagaccgaacgcctgcatccgcaacag
atacttgccgtaacctttaccaaccgtgcggcaaaggaaatgcaggaacgtgtggcccaa
gcccttggtcgtccggttgaaggctggtggctgggaaccttccactcgctttcagcgcgc
ttgttgcgccgtcatgccgacctgatcgggttaaagtcaaacttcaccatccttgatagc
gatgatcaggtccgcctgcttaagcagatcatggatgccgaacagatcgatccgaaaaaa
tggccagccaagcagcttatggggatcattcagcgctggaaggacaagggtctgacacct
gaacgggtcaatgaaagtgttgagttcgccaatggcggggccaagcacctttacaagatt
tatcaggaacgcctcaaagtcctgaacgcgtgcgattttggtgatctgttgctgcattgc
ctgaccctgttccagcagcatccggaagtcctgaagcagtatcagaacaccttccgctat
attctggtcgacgagtatcaggataccaacgttgcccagtatctgtggctgcgtgcaatg
gcgatggttcatcgcaatatctgctgcgttggtgatgatgatcaggcgatctatagctgg
cgcggggccgaggttggcaacatcctgcgctttgagtctgatttcccgggtgccaaggtg
gttcgtcttgaacaaaactatcgttcgaccccgcatattctggccgctgcatcccaactg
atcacgtttaacgatggccgtctgggcaaggagctgtggaccgagattgatactggcgac
aaggtgcttgtcaaaggtgtctgggacggggaagcagaggcacgcctgatcggtgaagat
atcgaagccctgcagcgcaagggcgttggcgcatcccagattgccattttggtgcgcgcc
ggtttccagacccgcgagtttgaggaacgtctgatcacgctgggcatcccgtaccgcgtt
gtcggtggtccgcgcttctatgaacgtcaggaaatccgtgatgcgctggcctatatccgg
cttgttgcgcagcccgatgacagtctggcgtttgagcgcatcgtgaatgtgcccaagcgc
ggggttggcaaggcatcgcttcagacactgcatcaatattcgcgtgatcaggcgatttcg
ctgccggcggcggcgcgcgatttgttggatacagaggaactcaaacccaagatgcgtcaa
agtatcggcggtcttttgggggatttcaaacgctggcgcgaaatgcttggcaacagcagc
catgtcgaagtcgttgaaaccgttctggatgaaagcggctataccgatatgtggcggaca
tccaaggaaattgatgcgcccggccgtctggaaaacctgaaagaactggtatctgcaatt
ggcgagttcgagaacctgaccagcttcctggaacatgtctcgttggtgatggaaaacgcg
cagaacgatcatgaggaaaaagtcaccatcatgaccctgcacgccgccaagggacttgag
ttcgattacgttttccttcctggttgggaagagggcgtcttcccccatcaacgtgcgatg
gatgaaaacggggtcaagggcctcgaggaagagcgtcgtttggcctatgtcggtattacc
cgggcgcgcaaacgtgcgaccatctgttatgccgccaatcggcgcatctataatcagtgg
caatcagccctgccatcgcgctttgttgatgagttgcccgacgaacatatcgaacgcagc
agcgataccggtcttggcgggcatggtggcaatcattcgccgggtgcgtggggtgccgat
gactggatgaaaatgccaagctgggcgagtgacagcagcaccccatcacgcaatccagtg
tcgggtgcgggggagcgtaaattcgcctcaagcggttggcaggatcgcgtgcgcaagaac
gtgattgatgtgaagcccgacggtgaaaccagttattccaccagttccaactcatcgaaa
tacaaggtgggcgatacggtgcgccatcgcaagttcgggtcgggaaccgtccgtgcggtc
gatggcaacaaactggaaatccatttcgaaagtgtcggcaccaagaaagtggtcgacagc
ttcatcctgccggggtaa
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