Thalassospira indica: DY252_08155
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Entry
DY252_08155 CDS
T05581
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tii
Thalassospira indica
Pathway
tii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DY252_08155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tii03019
]
DY252_08155
Enzymes [BR:
tii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DY252_08155
Messenger RNA biogenesis [BR:
tii03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DY252_08155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AXO14202
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All DBs
Position
1732701..1734509
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AA seq
602 aa
AA seq
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MTQFSELGLAEPVLRALAQEGYDAPTPIQAQSIPSLLDGKDLLGIAQTGTGKTAAFALPI
LDRLSKSQTRTPKGACRVLVLAPTRELAAQIGESFRAYGRFLNVRTAVVVGGVAPGPQIK
AITPGVEVLVATPGRLLDHVDAGKLSLKHVEVVVLDEADHMLDLGFLPPIKRIIKMLPRD
RQNLFFSATMPTQIGQLAGDMLSDPVKVSVTPVATTQERVEQSVYLIERTRKRQLLAELL
DNPAFKRTLVFTRTKRGADRVARHLEANKISAAAIHGNKSQNQRERALNAFKDGQINVLV
ATDIAARGIDVDSVTHVVNFELPNVPESYVHRIGRTARGGASGSAIAFCDEEERGLLRDI
EKTTRQSIPVIDRRDAKAAAEQEALSDEARESNRGRRSNGGGQSRGNGGRGASGGNGRGG
RPANGRNARNERSDRSDARASAPRRDRDDARKQTTQSRDGADNASRASADKAPSNPALEK
SKSRYKGGLKSKPANGRGGNAENGPRQNDGGKRPTKRVDSNGNRRDGAKADNSISSGLSF
MGSAEERRATGNGSNSARNTGPQGKRGGVNRNRNHRGAQSGGQPGGAGRENTSGKQPRRE
RA
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
ttgacccagttttccgaactcggcctcgccgagccggtccttcgcgcgcttgcccaagaa
ggctacgacgcgccgaccccgatccaggcacaatccattccctctcttctagacggtaag
gacctgcttggtatcgcacagaccggtaccggcaagacggcagcgttcgcattgccgatc
cttgaccgcctttccaaatcccaaacccgcacgcccaaaggggcatgccgtgtacttgtt
cttgcgccgacgcgtgaacttgccgcccagattggcgagagtttccgtgcctatggccgc
tttctcaatgtccgcacggctgtcgttgttggtggtgttgcccctggtccgcagatcaag
gcgataacccctggcgtcgaggttcttgtcgcaacacctggtcgtttgcttgaccatgtc
gacgccggcaagctcagccttaaacatgttgaagtggtggtgcttgatgaagccgaccac
atgcttgatcttggcttcttgccgccgatcaagcggatcatcaagatgttgccgcgcgat
cgccagaacctgtttttctctgccaccatgccgacccagattggtcagctggcgggtgac
atgctgtctgatcctgtcaaggtgtcggtaaccccggttgccactacccaggaacgtgtc
gaacagtcggtctatttgatcgaacgcacgcgtaagcgtcagctgctggcagagcttctt
gataatccggctttcaagcgtacgctggtctttacccggaccaagcgcggtgccgaccgt
gtcgcgcgccatcttgaagccaataaaatcagtgcggccgccattcatggcaacaaaagc
cagaaccagcgcgaacgtgctctgaacgccttcaaggatggtcagatcaacgtgcttgtc
gcaaccgatatcgccgcgcgcggtatcgatgtcgatagcgtgacccacgttgtgaacttc
gaactgccgaacgtgccggaaagctatgttcaccgtattggccgtacggcccgcggtggt
gcgagcggatcggcaattgcgttctgtgatgaagaagaacgcggtcttctgcgcgatatc
gaaaaaaccacccgccaaagcattccggtgattgatcgccgtgatgccaaggccgcagcc
gagcaggaagcactttccgacgaagcgcgtgaaagcaaccgtggccgccgcagtaatggt
ggtggtcagtcgcgcggaaatggcggacgtggagcatcgggcggcaatggtcgcggtggt
cgtccggccaatggccggaatgcccgcaatgaacgttcagatcgcagtgatgcgcgcgct
tctgcgccgcgtcgtgatcgtgacgatgcccgcaaacaaacgacgcaaagccgcgatggc
gcagacaatgcttcaagagcatcggctgacaaggccccttcgaacccggcactggaaaaa
tccaaaagccgttacaagggtggcctgaagtcgaaacctgccaatggtcgtggtggtaac
gccgaaaacggcccccgtcagaatgatggtggcaagcgcccgacgaaacgcgttgattcc
aatggaaatcgtcgcgacggggcgaaagctgacaattcaatttcttccggtttgtccttt
atgggcagtgccgaggaacgccgcgcgactggtaacgggagcaatagtgcccgaaatacc
ggaccgcaaggcaagcgcggcggtgtaaaccgcaatcgcaatcatcgtggcgcacagtcc
ggcgggcagccgggtggtgcgggccgcgaaaacacttctggaaaacagccgaggcgtgaa
cgcgcctga
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