Thalassospira indica: DY252_08940
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Entry
DY252_08940 CDS
T05581
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tii
Thalassospira indica
Pathway
tii03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tii00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DY252_08940 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tii03021
]
DY252_08940 (rpoC)
03400 DNA repair and recombination proteins [BR:
tii03400
]
DY252_08940 (rpoC)
Enzymes [BR:
tii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DY252_08940 (rpoC)
Transcription machinery [BR:
tii03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DY252_08940 (rpoC)
DNA repair and recombination proteins [BR:
tii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DY252_08940 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
Peptidase_M23
YnfE
Motif
Other DBs
NCBI-ProteinID:
AXO14331
LinkDB
All DBs
Position
1890044..1894231
Genome browser
AA seq
1395 aa
AA seq
DB search
MNELMKIFGQPQGTQSFDQIRIQIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYRGIICEKCGVEVTLAKVRRERMGHIELAAPVAHIWFMKSL
PSRLGLLLDMTLKDLERILYFENYVVIEPGLTPLKMGELLSEDQYMTAQEEYGEDSFRAG
IGAEAIRDMLAAIDLDEERETAKIDLKETNSEAKRKKLVKRLKLIEAFQESGARPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QESVDALFDNGRRGRPITGANKRPLKSMSDMLKGKQGRFRQNLLGKRVDYSGRSVITVGP
NLKLHQCGLPKKMALELFKPFVYAKLELYGMATTIKAAKRMVEKERAEVWDILEQVIREH
PVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARTLMMSTNNILSPASGKPIIVPSQDIVLGLYYISMERDGQPGEGMSFVNIAEIEQALDE
GVVNLHSKVNARYHTVDENNEPITVRVATTPGRMLLSELLPRHPRIPFSTINKLLTKKDV
SNVIDVVYRHCGQKETVIFADRMMGLGFNWACKAGISFGKDDMIIPDAKEKLVGETHEKV
KEYEQQYQDGLITRGEKYNKVVDAWAQCTDDVSEAMMKVISATAEGDNVNSVYMMAHSGA
RGSAAQMRQLAAMRGLMAKPDGSIIETPIISNFKEGLTVQEYFNSTHGARKGLADTALKT
ANSGYLTRRLVDVAQDCIITQHDCGTDRGLDIAAVVDSGEVIETLSDRILGRFTADEIVN
PSTGEIIVPKNEMVEEDHLDLIEKAGVEMARIRSVLTCDAETGVCGHCYGRDLARGTTVN
IGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEVSGVEANFDATVKLKNRAVVENSS
GVNIVMARNLEILLIDKTGRERAKYRVPYGAKLLTDEGAQVTRGQKLAEWDPYTLPIITE
KEGYVNYVDLLENVTIREVYDEATGIASKTVIDWKSMPKASDLKPRVTLRNENGEVINLD
NGLEARYFLSVDAILSVENGQKVAAGDVLARIPREGSKTRDITGGLPRVAELFEARKPKE
HAIISDIPGRVEFGKDYKNKRRVVVHPLEDSGLTEPVEYLIPKGKHLAVQEGDFVEQGDQ
LLDGSPVPHDILRVMGVPALADYLVNEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITKP
GDTTLLVGEIIDRVDFDAENERALKEGGELAEGAPVLQGITKASLQTHSFISAASFQETT
RVLTEAAVSGKTDTLIGLKENVIVGRLIPAGTGAVMNRFRALAAERDKNVQIEAEEEIGD
NFGPQSDTASLPAGE
NT seq
4188 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagttgatgaagatcttcgggcagccgcagggcacccagagcttcgatcagatc
cggattcagattgccagcccggagcgtatccgctcctggtctttcggcgagatcaagaaa
ccggaaaccatcaactaccggaccttcaaaccggagcgcgacggcctgttctgtgcgcgc
atttttggtccggtgaaggactacgaatgcttgtgcggcaagtacaagcgtatgaagtat
cgcggcattatctgtgagaaatgcggcgtcgaagtgactctggccaaagtacgtcgtgaa
cgtatgggccatatcgaactggcggcacctgttgcccacatctggttcatgaagtcgctg
ccgagccgtctgggtctgctgctggatatgacgctcaaggatcttgagcgcattctgtac
ttcgaaaactatgtggttatcgaaccgggccttaccccgcttaaaatgggtgagcttctg
tccgaagaccagtatatgaccgcccaggaagaatatggcgaagacagcttccgcgccggt
atcggtgcagaggccatccgcgatatgcttgcggcgatcgaccttgatgaagaacgcgaa
accgcgaaaatcgacctcaaggaaaccaattccgaagccaagcgcaagaagctggtcaag
cgtctcaagctgattgaggccttccaggaatctggcgcacgcccggaatggatgatcctt
gaagtgatcccggttattccgccggaactgcgcccgctggttccgctggatggtggccgt
ttcgcgacctcggatctgaacgatctttaccgtcgtgtgatcaaccgtaacaaccgtctg
aagcgcctgatcgagcttcgtgcgcctgatatcatcgtgcgtaacgaaaaacgtatgctt
caggaatcggttgacgcgctgtttgataacggccgtcgcggtcgtccgatcaccggtgcc
aacaagcgtccgctcaaatcgatgtcggacatgcttaaaggtaagcagggtcgtttccgt
cagaaccttctgggtaaacgcgtcgactattccggtcgttcggttattaccgtgggtccg
aacctgaaactgcaccagtgcggtctgccgaagaaaatggcgctcgaactgttcaagccg
ttcgtttacgcgaagctggaactgtacgggatggcgaccaccatcaaggctgcaaagcgc
atggtggaaaaagagcgtgccgaagtttgggatatccttgaacaggttatccgtgaacat
ccggtcatgcttaaccgcgcaccgacgcttcaccgtcttggtattcaggcgttcgagcct
accctgatcgaaggtaaggccatccagctgcacccgctcgtttgtactgcgtttaacgcg
gacttcgacggtgaccagatggctgttcacgtaccgctgtcgcttgaagcccagcttgaa
gcacgtaccctgatgatgtcgaccaacaacatcctgtcgccggcatcgggtaaaccgatc
atcgtgccgtcgcaggacatcgtcctcggtctgtactacatctccatggagcgtgatggt
cagccgggcgagggcatgtcgtttgtcaacatcgccgagatcgagcaggctctggatgaa
ggtgttgtaaacctgcattccaaggtcaatgcccgttaccacacggttgatgaaaacaac
gaaccgatcaccgttcgtgttgccaccaccccgggccgcatgttgctgtcggaacttctg
ccgcgtcatccgcgcattccgttctcgaccatcaacaagctgctgaccaagaaagacgtc
tcgaacgttatcgacgtcgtctatcgtcactgtggccagaaagagaccgttatctttgct
gaccgcatgatgggccttggtttcaactgggcatgtaaagccggtatttcgtttggtaag
gatgacatgatcattccggacgccaaggaaaagctggttggcgagacccatgaaaaggtc
aaggaatacgagcagcagtaccaggatggtctcatcacccgtggtgagaaatacaacaag
gttgttgacgcctgggcacagtgcaccgacgacgtttccgaagcgatgatgaaagtcatc
tcggcaacggctgaaggtgacaatgtgaactcggtttacatgatggcgcactccggtgcc
cgtggttctgccgcccagatgcgtcagctggctgctatgcgtggcctgatggcgaaaccg
gatggctcgatcatcgagacgccgattatttcgaactttaaagaaggcctgaccgtgcag
gagtacttcaactccactcacggtgctcgtaaaggtctggctgataccgcactgaaaacg
gcgaactcgggttacctgacccgtcgtctcgttgacgtggctcaggactgcatcatcact
cagcatgattgcggtaccgatcgtggcctcgacatcgcagccgtcgtcgactccggtgag
gttatcgaaaccctttccgatcgtatcctcggtcgtttcaccgctgacgagattgtcaat
ccgtcgaccggtgaaatcatcgtaccgaagaacgaaatggtcgaagaagatcaccttgat
ctgatcgaaaaggctggcgtcgaaatggcgcgtatccgttcggttctgacctgtgacgcc
gaaaccggtgtttgcggccattgctatggtcgtgacctggcccgcggtaccacggtcaac
atcggtgaagctgtcggtgttatcgccgcacagtcgatcggtgaaccgggtacccagctg
accatgcgtacgttccacattggtggtgccgcgcagcgtggtgcagaagtttccggtgtc
gaagcaaacttcgatgccaccgtgaaactgaaaaaccgcgcggttgttgagaactcgtcg
ggcgtgaacatcgtcatggcgcgtaacctcgagatcctgttgatcgacaagaccggtcgt
gaacgtgcgaaatatcgtgttccgtatggtgcgaaacttctgaccgatgaaggcgcgcag
gttacccgtggccagaaactggctgaatgggatccgtacaccctgccgatcatcaccgag
aaagaaggttacgtgaactatgtcgaccttctcgagaacgtaaccattcgcgaagtctat
gacgaagcgaccggtatcgcctcgaagacggttatcgactggaagagcatgccgaaggca
tccgaccttaagccgcgcgttaccctgcgtaacgaaaacggcgaggtcatcaacctggat
aacggtcttgaagcccgttacttcctctcggttgatgctattctctcggtcgagaacggt
cagaaggtcgctgctggtgatgtgcttgcgcgtatcccgcgtgaaggttcgaaaacccgt
gacattaccggtggtctgccgcgcgttgccgagctgttcgaagcccgtaaaccgaaagaa
cacgcgattatctcggatatcccgggtcgcgtcgaattcggcaaggactacaagaacaag
cgtcgcgtcgtggttcatccgctcgaagactcgggtctgaccgaaccggtcgaatacctg
atcccgaaaggcaagcaccttgccgttcaggaaggcgacttcgtcgaacagggcgatcag
cttcttgatggttcaccggttccgcacgacattctgcgtgttatgggcgttccggcactg
gcagattacctggtcaacgagatccaggaagtctaccgtctgcagggcgtgaagattaac
gacaagcacatcgaagtcatcgtacgtcagatgctgcagaaagtggaaatcaccaaaccg
ggtgacaccacgcttctggttggcgaaatcattgaccgcgttgattttgatgctgaaaac
gaacgtgctcttaaagaaggcggcgaactggccgaaggcgcaccggtcctccaggggatc
accaaagcctcgctccagacgcactccttcatttcggccgcgtcgttccaggaaaccacg
cgcgttcttaccgaggctgctgtctcgggcaaaaccgatactcttatcggtctgaaagag
aacgtcatcgtggggcgtctgatcccggctggtaccggtgcggtgatgaaccgcttccgt
gcactggctgccgaacgcgacaagaatgtacagatcgaagcagaagaggaaatcggcgac
aactttggtccgcaatccgatactgcttcactgccggcaggcgaataa
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