Thalassospira indica: DY252_11625
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Entry
DY252_11625 CDS
T05581
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tii
Thalassospira indica
Brite
KEGG Orthology (KO) [BR:
tii00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tii03032
]
DY252_11625 (topA)
03400 DNA repair and recombination proteins [BR:
tii03400
]
DY252_11625 (topA)
Enzymes [BR:
tii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DY252_11625 (topA)
DNA replication proteins [BR:
tii03032
]
Prokaryotic type
DNA Topoisomerases
DY252_11625 (topA)
DNA repair and recombination proteins [BR:
tii03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DY252_11625 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
AXO14791
LinkDB
All DBs
Position
complement(2435305..2437941)
Genome browser
AA seq
878 aa
AA seq
DB search
MNLVIVESPAKAKTINKYLGDDYKVLASFGHIRDLPSKDGSVDTDNDFAMVWETDGRSEK
QIKEIASAARDSDTIYLATDPDREGEAISWHILEVLEQKKLLRGRDVHRVVFHEITKKAV
TEAIANPRELNQELVDAYLARRALDYLVGFNLSPVLWRKLPGSRSAGRVQSVALRLICER
EIEIEAFKPDEYWSLEAGFAVPEGKFSARLTHLNGEKLDKLALGDESAAKIAKEKVESRS
YTVSKVERKDVKRRPQPPFTTSTLQQEASRKLGFGAKRTMQLAQRLYEGVDIGGETVGLI
TYMRTDAVVLSQEALAAARRLIGKDYGDQYLPANARSFANKAKNAQEAHEAVRPTDLFRR
PEQVSRHLDKDQLALYTLIWKRTVACQMEDARFDQVAVDLSSNDNHVVLRANGSVVKFDG
FLKLYQEGKDDEAEDENDRRLPPLKEGQKPDLGKVSIDQHFTQPPPRYTEASLVKKMEEL
GIGRPSTYASIISVLQDRNYVLLERRRFVAQDRGRLVTAFLSKFFERYVQYNFTADLENQ
LDEVSMGKLEWKDVLKDFWKSFKGNVDEAKELKITDVLDALQVMLENYLFPPREDGTDPH
KCPKCTDGTLSLKLGKFGAFLGCSNYPECNYTRPLVANENGSESELDSGPKVLGIDKETG
KEITLRKGPYGVYVQLGEEEEVEGKNGKPKKVKPKRTSLPKGLEPSVVDLTKAEELLTLP
RVVGIYPDTGEEMKANIGRFGPYVQAGSIFASLKADDDVLTIGENRAITLIADKREKAGT
EIGKHPDDGEPIFVAVGRWGPFVKHKKTIANIRDVERDDITLEMAIKAIKEKEAKSGKTT
KAATKKTATAKKKAPAKKKTAAKKPAAKKTTTKKAAAN
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgtcatcgtcgaatccccggccaaagccaagacgatcaataaatatctcggc
gacgattataaggtgctggcctcgtttggtcatatccgcgatctgccgtccaaggatggt
tcggttgataccgacaatgattttgcaatggtctgggaaaccgatggccgttccgaaaag
cagatcaaggaaattgcttcggcggcacgtgactctgacaccatctacctcgcgactgac
ccggatcgcgaaggtgaagccatttcctggcacattcttgaagttctcgagcagaaaaag
ctgctccgcggtcgcgatgtccatcgcgttgtgtttcacgagatcaccaagaaagccgta
accgaagccatcgccaatccgcgcgagctcaatcaggaactggtggatgcctatctggcg
cgccgtgcacttgattatcttgtcggctttaacctgtcgccggttctgtggcgcaaattg
cccggttcgcgttcggcaggccgcgtgcaatcagttgcgctccgcctgatttgcgaacgc
gagattgagatagaagccttcaaaccggacgaatactggtcgcttgaggctggctttgcc
gttcccgagggcaagttttccgcacgcctgacccatctgaatggcgaaaagcttgataag
ctggcacttggtgatgaaagtgctgccaagatcgccaaggaaaaggtcgaaagccgcagc
tacaccgtttcaaaggttgagcgcaaagacgtcaaacggcgtccgcagccgcctttcact
acatcgaccctgcagcaggaagcatcgcgtaaacttggctttggcgcgaaacgcaccatg
cagcttgcgcagcgcctttatgaaggtgtcgatatcggtggcgaaacggttggtctgatc
acctatatgcgtaccgatgccgtggtgctttcacaggaagcactcgccgccgcacgccgt
ctgattggcaaggattacggtgatcaataccttccggccaatgcgcgcagctttgccaac
aaggccaagaacgcccaggaagcccacgaagctgttcgcccgaccgatctgttccgtcgt
ccggaacaggtttcgcgtcaccttgataaggaccagttggcgctttacaccctgatctgg
aaacgtaccgtggcgtgtcagatggaagacgcccgtttcgatcaggtcgcagtcgatctg
tcatcgaatgacaatcacgtggttctgcgtgcaaatggttctgttgtgaagtttgacggc
ttcctgaaactttatcaggaaggcaaggatgacgaggccgaagacgaaaatgatcgtcgc
ctgccgccgttaaaagaaggccagaagcccgaccttggcaaagtcagcattgatcagcac
ttcacccagcccccgccccgctataccgaggcgagcctggtcaagaagatggaagaactc
ggcattggtcgtccgtcgacctatgcgtcgatcatttcggttcttcaggacaggaactat
gtgttgctggaacgtcgccgtttcgtcgcacaggaccgtggccgtctggtaaccgccttc
ctgtcgaagttctttgaacgctatgtgcagtacaacttcacggccgatctggaaaaccag
cttgatgaagtttcgatgggcaagctggaatggaaagacgttctcaaggatttctggaag
tcgttcaaaggcaatgtcgacgaggccaaggaactcaagatcactgacgtccttgatgcc
cttcaggtaatgctggaaaactacctgttcccgccccgcgaagacggaacagacccgcat
aaatgcccgaaatgcaccgatggaacgctgagcctcaagctcggcaagtttggcgccttc
cttggttgttcgaactatccggaatgcaattatacccggccgctcgttgccaatgaaaac
ggatccgagtccgaacttgattccggccccaaggtccttggcattgacaaggaaaccggc
aaggaaattacccttcgcaaaggcccgtatggcgtttacgtccagctgggtgaggaagag
gaagtcgaaggcaagaacggcaagccgaaaaaggtcaaaccgaaacgcacatccctgcca
aaggggttggagccatctgttgttgacctgacaaaggccgaggaactcctgaccctgcca
cgtgttgtcgggatttaccccgacactggcgaggaaatgaaggccaatatcggccgtttc
ggcccatacgttcaggcaggcagtatttttgcctctctcaaggccgacgatgatgttctg
acgatcggtgaaaaccgcgcgatcacgctgattgccgacaagcgcgaaaaggccggtacc
gaaattggcaagcatcccgatgatggtgaaccgatctttgtcgccgttggccgctgggga
ccgtttgttaagcacaagaaaaccatcgccaatatccgcgatgtagaacgtgatgacatc
acccttgaaatggccatcaaagccatcaaggaaaaggaagccaagtcgggcaaaacgacc
aaggccgcgaccaagaaaacggcaacggcgaagaaaaaagcccctgcgaaaaagaaaacg
gctgcaaagaagcccgcagcgaagaagacaaccacgaaaaaggcggcggcgaattaa
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