Tuwongella immobilis: GMBLW1_00580
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Entry
GMBLW1_00580 CDS
T06428
Name
(GenBank) ribonuclease r : Ribonuclease R OS=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) GN=rnr PE=3 SV=1: RNB: S1
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tim
Tuwongella immobilis
Pathway
tim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GMBLW1_00580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tim03019
]
GMBLW1_00580
03016 Transfer RNA biogenesis [BR:
tim03016
]
GMBLW1_00580
Enzymes [BR:
tim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GMBLW1_00580
Messenger RNA biogenesis [BR:
tim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GMBLW1_00580
Transfer RNA biogenesis [BR:
tim03016
]
Prokaryotic type
tRNA degradation factors
GMBLW1_00580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_HELZ2
OB_RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
VTS05171
UniProt:
A0A6C2YSP9
LinkDB
All DBs
Position
1:4270359..4272503
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AA seq
714 aa
AA seq
DB search
MSELESRLLATLNSRHYKPLTLKALARRLGLVSGNDREFRKVVRGLVQTGRAQFDRDHQL
RATPPHGTVVGLFRRTHSGRGVVRAHHGQAHRVAQEIAIAEHDCLDAANGDEVLVKLAKK
PSRTEAYATGEVVKVLQRNTRNFVGTYYEHREQGYVRVVGTQFPQGIWVGDPGAKGAKPD
DQVVIEMLRFPTLTDERGQAVITEVLGERGKPGVDVLMVIRSHDLPDAFPEDVLADARHQ
AELFHEDDFSGRTDFTQSLVISIDPIDARDFDDAVALHKDAKTGNWVLEVHVADVAHFVP
PGSPLDREARRRGTSVYLPGRVLPMIPELISNGLASLQQDRVRYVRTAVLEFQPDGTPVS
ADFHNGVIRNRRRFTYEEVSEFLAKPEAVGDEQLAPELRQTLLNMRELAIMLRARRFKRG
ALELTMPEAVLEYDSEGKVSGAHLAVHDISHQIIEEFMLAANTAVATLFHDRKIATMRRI
HPAPEPSALEQFADFVNHLGYRVKRSQDRFELQRVLEHSRIKGEAPAVHYALLRSLKQAQ
YGPMEEEHYALAIEHYCHFTSPIRRYPDLVVHRMLAQLIAGRRPGSDVSELTALGDQCSR
LERRAEKAERELVRLKLLTFLSTRIGMQMPATITSVSEYGFFAVGNHLPVDGMVHISTLE
DDYYYFDDATHTLSASKGKKRYRLGDTITVEILRVDLTKRTLDLKAARPPRASV
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaactcgaatcgcgcctgctggccacactcaacagcaggcattacaaaccgctc
acgctcaaagccttggctcgtcgattgggtctagtctcgggcaacgaccgcgaattccgc
aaggtcgtccgaggactcgtccaaactggccgcgcccaatttgatcgtgaccaccaactc
cgcgccacaccaccgcacggaaccgtcgtcggactcttccgccgcacgcattccggtcgg
ggagtcgtgcgtgcccatcatggtcaagcgcatcgcgtcgcgcaagaaatcgccatcgcc
gagcatgattgtctggatgccgccaatggcgatgaagtgctggtgaaactcgccaagaag
ccgagccgcacggaagcctacgccaccggcgaagtcgtgaaggtgctgcaacgcaacacg
cgaaatttcgtcggaacttattacgaacaccgcgagcaaggctacgttcgcgtcgtgggc
acgcaatttccgcaaggaatctgggtgggtgatcccggtgccaaaggtgccaaaccagac
gatcaagtcgtcatcgaaatgctgcggtttccgacgctgaccgatgaacgcggccaagcg
gtcattaccgaagttctcggcgaacgcggcaagcccggcgtcgatgtgctgatggtgatc
cgctcgcacgatctccccgatgcgtttcccgaagatgtccttgccgatgcccggcatcaa
gcggaactgtttcacgaggacgatttcagcgggcggaccgatttcacgcaatcgctggtc
atttcaattgatccgatcgatgcccgcgatttcgacgatgccgtcgccctgcacaaagat
gcgaaaaccggcaactgggtgctggaagtgcatgtcgcggatgtcgcccacttcgtgccg
cccggttcgccgctcgaccgtgaagcacgtcgccgtggcaccagcgtctatcttccgggt
cgcgtcctgccgatgattccggagttaatctccaacggtctggcgagtttgcagcaggat
cgcgtgcgctacgttcgcacggccgtgctggaatttcaacccgatggcacacccgtctct
gccgattttcataacggcgtcatccggaatcgtcgccgcttcacctatgaagaagtgtct
gaatttctggccaagccggaagccgttggcgatgaacaacttgcgccggaattgcgccag
acgctcttgaatatgcgcgagctagcaatcatgctccgcgcccgacgattcaagcgcggc
gcactcgaactgaccatgcccgaagctgtcttggaatacgattccgaaggcaaagtcagc
ggcgcgcatctggccgtgcacgacatcagccaccaaatcatcgaagaattcatgctggcg
gccaataccgctgtggcgacattatttcacgatcgcaagatcgccaccatgcgacggatt
caccccgccccggaaccgtccgcactcgaacaattcgccgacttcgtcaatcatctcggc
tatcgtgtcaaacgatcgcaagaccgatttgaattgcagcgcgtgctcgaacattctcga
atcaaaggtgaggcccccgccgtccattacgccctgctccgcagtctcaaacaggcccaa
tacggcccaatggaagaggaacactacgcgctggccatcgaacattattgtcacttcacg
tcgcccattcgccgctatccggatctcgtcgttcaccgcatgttggcgcaactcattgcc
ggcagacggcccggaagcgatgtctcggagttgaccgcactcggcgaccaatgcagccga
ctggaacgccgggccgagaaagccgaacgcgaactcgtccgcctcaaactgctgacgttt
ctcagcacccgaatcggcatgcagatgcccgccaccatcaccagcgtttcggagtacggc
ttcttcgccgtcggcaaccacctcccagtcgatggcatggtccacatctccacgctcgaa
gacgattactactatttcgacgacgccacgcatacactttccgccagcaaaggcaaaaaa
cgctaccgcctcggcgacaccatcaccgtcgaaatcctccgagtcgacctcaccaaacgc
accctcgacctcaaagccgcccgccctccccgtgcctcggtataa
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