Tuwongella immobilis: GMBLW1_07410
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Entry
GMBLW1_07410 CDS
T06428
Name
(GenBank) dna polymerase i : DNA polymerase I OS=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) GN=Plim_3011 PE=3 SV=1: 5_3_exonuc_N: 5_3_exonuc: DNA_pol_A_exo1: DNA_pol_A
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
tim
Tuwongella immobilis
Pathway
tim03030
DNA replication
tim03410
Base excision repair
tim03420
Nucleotide excision repair
tim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GMBLW1_07410
03410 Base excision repair
GMBLW1_07410
03420 Nucleotide excision repair
GMBLW1_07410
03440 Homologous recombination
GMBLW1_07410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tim03032
]
GMBLW1_07410
03400 DNA repair and recombination proteins [BR:
tim03400
]
GMBLW1_07410
Enzymes [BR:
tim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GMBLW1_07410
DNA replication proteins [BR:
tim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GMBLW1_07410
DNA repair and recombination proteins [BR:
tim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
GMBLW1_07410
NER (nucleotide excision repair)
GGR (global genome repair) factors
GMBLW1_07410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
HHH_2
IMS_HHH
HHH
Motif
Other DBs
NCBI-ProteinID:
VTS03744
UniProt:
A0A6C2YPW3
LinkDB
All DBs
Position
1:3366844..3369765
Genome browser
AA seq
973 aa
AA seq
DB search
MTDPAPQVYLVDAHGLIFQVFHAISGMTSPDGRPTNAVYGFARDLMDISESVRPDYLVCA
FDLPGKTFRSDIFDAYKANRSEPPSDLILQLPLIQQVLQAMNIPSIGIPGYEADDVLATL
ADAADKAGMHVTICSSDKDCRQLIRDRVQLLNLRKKTRMDRAELLADWGVTPEQVVDFQA
LVGDKVDNVPGVPGIGEKTAAKLLQQFGSIDGIIQRIDELPKGKNRSNLEAAIASGAIHL
SRQLTRLSTEVPIALEWDKWKRAEWDLPRLQSLFQELGFRSYAERIRGKLKSAGAAANAT
LLETAGIASRAVTKAKAASTAPAKATTPGLFDTDDSADAADHSVDVDFPFGALGPSTDTW
GGNYRLINQLSDWSDFLAQLSQQSSFAFDLETTSLRFDEARIVGFAFCWNVGEAVYVPAL
APLGEPTIPIDRLLTDLKPILENPKIGKRNQNIKFDANILARKGVTVRGIVGDSMVAHYL
LHAGERSHNLDEMTRQYFQHENITIESLIGKGKKQLSMSEVPTEKIAEYAAEDADAAWRL
CERLETELQSAGLDALYREVEIPLIEVLGRMESTGIRIDVPFLNRLSGEMAEQLETLEAE
IHQLAGREFNIGSPKQLRQILFEEMKLPMQKRTDTTGEASTDQESLERLGALGYELPRKL
IEHRQISKLKGTYVDALPKLVDLQTGRVHTSFNQTVAATGRLSSSDPNLQNIPTRTEQGK
QLRQAFLPRDGWQLLTADYSQIELRMLAHYSGDPALRQAFLDDSDVHTRVAADIFKVPEA
EVSSLQRRVAKTVNFGVIYGMSAHGLAARLGILRDEATGFIDAYFARYPQVLAYQDTLLA
NARKNGYVSTILGRRRRFDPSVIRPGSTFQQRNQAEREAINMEIQGSAADLMKLALLRVD
EQLQREQRQSKMLLTVHDELVFEVPPDEIETMVGLVRNAMTTAMELTVPLHVDVSIGPNW
LDTVDWPQSAGAP
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccctgccccgcaagtgtacctcgtggatgcgcatggcctgatctttcaggtc
tttcatgccatttccggcatgaccagccccgatggtcgccccacgaatgcggtgtacggc
ttcgcccgcgatctgatggacatttccgaatccgttcgcccggattatctggtctgtgcc
ttcgacctgcccggaaaaaccttccgctccgatatttttgatgcctacaaagccaatcgc
tcggaaccgcccagcgatctaatcttgcagttgccgctgattcaacaagtgctgcaagcc
atgaatattccgtcgatcggaattcctggctacgaggccgacgatgtcttagccacgctt
gccgatgctgccgacaaagcgggcatgcatgtcaccatctgttcgagcgacaaagattgt
cggcaattgattcgggatcgcgttcaactgctcaatcttcgcaagaaaacgcgaatggac
cgcgcggaactcctcgccgattggggcgtcactcccgaacaggtcgtcgatttccaagca
ttggtcggcgataaagtcgacaatgtgcccggcgtgcccggcatcggcgaaaagaccgcc
gcgaaattactgcagcaatttggctccatcgatggcatcattcaacggatcgacgaactc
cccaaaggcaaaaaccgcagcaacttagaagcggccatcgcctcgggagcgatccatctc
agccgtcaactgacgcgactcagcaccgaagtcccaattgcgttggaatgggacaagtgg
aaacgcgcggaatgggacttgccccgactccaatccttgttccaagaattgggcttccgc
agttacgccgagcgcatacgcggaaagttgaagtccgccggtgccgccgcaaatgccacg
cttttggaaacagccggcattgcttcccgtgcggtgaccaaagcgaaggccgcctcgact
gccccggccaaggccacgacgccggggttatttgacacggacgattcggccgatgctgcg
gatcattcggtcgatgtcgattttccctttggcgcgctcggtccttcaacagacacttgg
ggcgggaactatcgcctcatcaatcaactatccgattggagcgatttcctcgcacaattg
tcgcaacaatcgtcctttgccttcgatttggaaacgacatccttgcgcttcgacgaggct
cggattgtcgggttcgccttctgttggaatgttggcgaggcggtctatgttcccgcgctc
gccccgctgggtgagccgacgattcccatcgatcgcctgctgacggatctcaagccgatt
ctcgaaaatccgaagattggcaaacgcaatcagaatatcaaattcgatgcgaacatcctt
gcgcggaaaggcgttaccgtgcgagggatcgtcggcgattctatggtggcgcattacctc
ttgcatgcgggcgaacggtcgcacaatctcgatgagatgacgcggcagtacttccagcat
gagaatatcaccatcgaatcgttgattggcaaaggcaaaaaacagttgtcgatgagcgaa
gttccgaccgagaaaatcgcggagtacgccgccgaggacgccgatgccgcgtggcgattg
tgcgagcgactcgaaaccgagctgcaatcagcggggttggatgcgttgtatcgcgaggtg
gaaattccgctgatcgaagtgctgggtcggatggaaagcacgggcattcgcatcgatgtg
cccttcttgaatcggctctcgggcgaaatggccgagcagttggaaaccctggaagcggag
attcatcaactcgccggacgcgaatttaacatcggctcacccaagcagttacggcagatt
ctgttcgaagaaatgaagctgccgatgcagaagcgcaccgacaccaccggcgaagcgagc
accgatcaagaatcgcttgagcgactcggcgcattgggatacgagcttccacgcaaattg
atcgaacatcgtcagattagcaaactcaagggcacctatgtggatgccctaccgaagctg
gtcgatctgcaaaccggacgggtgcatacctcgtttaatcagacggtggccgcgaccggg
cgactgtccagcagcgacccgaatttgcagaatatcccgacacgcaccgaacaaggcaaa
cagcttcgccaagcgtttctccctcgtgatgggtggcagttgctgaccgccgattattcg
cagatcgaattgcgaatgttggcgcattattccggcgatccggcattgcggcaggcgttt
ctggatgattccgacgttcacacgcgggtggctgccgatattttcaaggttcccgaagcc
gaagtgagcagtttgcagcgtcgggtggcgaaaaccgtgaacttcggtgtcatttatggc
atgagtgcccatggcttggccgctcgactggggattctgcgcgatgaagccaccgggttc
atcgatgcctacttcgcccgctatccgcaggtgttggcgtatcaagacacgctcttggcg
aatgctcgcaaaaacggctacgtctcgacgattttgggccgtcgccgccgattcgatccc
agcgtgattcgccccggttcgacgttccagcaacgcaatcaagccgaacgcgaagcgatc
aatatggagattcaaggatcggctgccgatttgatgaaattggcattgttgcgagtggat
gaacaattgcaacgcgagcaacgtcaatccaagatgttgctcaccgtgcatgatgagctt
gtttttgaggttccgccagacgaaatcgagacgatggtgggcctggttcgcaacgccatg
accaccgcgatggaactgacggtgccgctccatgtcgatgtcagcattggcccgaattgg
ctggataccgtggattggccccaatcggcgggtgccccatga
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