Tuwongella immobilis: GMBLW1_08250
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Entry
GMBLW1_08250 CDS
T06428
Name
(GenBank) excinuclease abc subunit a : Excinuclease ABC, A subunit OS=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=Psta_1575 PE=3 SV=1: ABC_tran: ABC_tran
KO
K03701
excinuclease ABC subunit A
Organism
tim
Tuwongella immobilis
Pathway
tim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GMBLW1_08250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tim03400
]
GMBLW1_08250
DNA repair and recombination proteins [BR:
tim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GMBLW1_08250
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GMBLW1_08250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_16
RsgA_GTPase
nSTAND1
AAA_21
AAA_25
DnaJ_CXXCXGXG
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
VTS03493
UniProt:
A0A6C2YQ39
LinkDB
All DBs
Position
1:3251310..3258371
Genome browser
AA seq
2353 aa
AA seq
DB search
MSKSRVDDLFTTRTSGYDDHLSLELLRGWSRWFTMDTHSIIVRGAREHNLRNVNLELPRN
QLICFTGVSGSGKSSLAFDTLYAEGQRRYVESLSSYARQFLGQLPKPDVDYIGGLSPAIS
IQQKTASRNPRSTVGTVTEISDFLRVLYARIGKGHCPQCQRPITAQTRDQIIGRILALPP
GTAFLILAPMVRGQKGEFRDFFADMLKRGFVRARVDGQIVRLTDDLQLNRRIKHDIDLVI
DRLKNDPKNRTRLAEAVEQALGLAEGNLIVSIEADRAKAAEVQAEVGEDDAEVRTSRGPD
ELLLSAHYACVHCNISYDPPTPQLFSFNSPRGMCLTCDGLGTQFTFDPDLLIPDQNLSIA
KGAVPIIGSLTGMGRWRKHIYEGVAKALEIDLKKPWKQLSDREKQLYLYGAGDQKITFEW
KQRGGGVWRHAAPWEGVIPQLLASFKKTAAGPRRMQLEKYMRIVRCPSCKGHRLNSQARA
VQVGEKTLVELGSMPIGDLAPWLDRLEPSLSRTESVIAGELLKEIRARLGFLLNVGLHYL
SLDRSAPTLSGGEAQRIRLAGQIGSGLVGVLYILDEPSIGLHPRDNLRLLRSLEKLRDMG
NTVLVVEHDEDTMRAADFLVDFGPGPGVKGGQIVSVGTPYEVVRDPNSLTGAYLSGRKEI
AIPTNRRPMTERKLVIEGARHHNLRNLRVEIPLGCFVAVTGVSGSGKSSLVNDILMRGLV
KLLRPTGRKAAAEETDDDDDTESAIAEIAGDCDAILGYEQIDKVIDIDQKPIGRTPRSNP
STYIKVWDEIRILFAEMNEAKVRGYQPGRFSFNRPGGRCESCEGNGSNKLEMDFLADVWV
QCPVCEGKRFNRETLQVRYRGKNIHDVLEMDVQEALELFENHPKIRNMLQTLHDVGLDYL
KLGQPSPTLSGGEAQRIKLAKELCRRSSGKTLYVLDEPTTGLHFEDIRKLLEVLHGFVNA
GNSVIVIEHNLDVIKTADWLIDMGPDGGSGGGQVVVAGTPETVAECTQSFTGEALRPILQ
RIIPEIPKKPKSKRGKAAIPNERITHLRVDGASQHNLKHISVAIPREEMTVCSGPSGSGK
STLALDTIYAEGQRRYVESLSSYARQFLGQVQKPKVESITGLSPAISIEQKTTSKSPRST
VGTITEIYDYLRVLYARLGQLYCPACAIPVGTQTADEIIEQILGLPEGTKLYIMAPLERK
GQEKYESLFDEARRSGFLRIRVDGKSFSLDEPPTIDHRRQHRVEIIVDRNVVREGTRTRI
ADSVETALSVGRGVMHLAYVEADRDEATWKVDVFSQHLACHSCGRSFEQLNPHHFSFNSP
LGWCPTCEGLGVQRGANSALLMRDSQQSLRDGAIAAWPPLTPENPFLAYAEAIAKHLGIN
LDTPFDKLDATVQRALLYGTGETELTLHPAKPSSKKFQYKGVFPALDEAARVSYVYRSRL
DHLMDEVPCSACHGSRLRDDASSVQFDRVTLRELCELPIGEVLARVKRLELPPTDRQVAE
ELLREITNRLQFLIDVGLDYLSLGRPGPTLSGGEAQRIRLASQIGSGLTGVLYVLDEPTI
GLHPRDNTRLLKALQKLRDLGNTLLLVEHDREVIQSADYLLDFGPGAGDRGGEITAAGTP
SQIQKVKQSLTGQYLSGKMAIAVPTNRRVPTLQPKETPEQRMANLRTLRVVGARHHNLKN
VTVDFPLGCLISVTGVSGSGKSSLINEVLYNTLARKLHRARTSGAAHDEIVGLDQIDKII
NVDQDPIGNSPSSNPATYTGVFELIRQLYSQMPESKVRGYQPRRFSFNHPGGRCEACEGN
GQKKIEMHFLPDVWVECDVCHGKRYNPETLAVQYKGKSISDVLTMRVSEALELFRNIPKI
RHILQTLVDVGLDYLSLGQSAPTMSGGEAQRVKLAAELSRPSTGRTLYLLDEPTTGLHFD
DVRKLLEVLHRLVDLGNTVIVVEHNLDVMKSSDWIIDIGPEAGLNGGQVVACGTPEEVVA
QAKRAKPVSHTGKVLAEVLAAGPFAERTRFDPLQMLQAQEGDVSLESVGADAKLPWEADG
VRWHTQDRITTTGKRCLWDGSILTWLTDKIAKTGNFSEPNWNSRTIVEVAAKKKSLGWFL
HAMTGMESYLRLVFHVHKQQFKSEKLARDLALPEFASIPELATLNREDRVSVKKRNGIWH
EVVILAYRREELDTPAFEQFLTDAMRAFQVQLTEAQTNVENVMPWKLNGEKWHLGEKGFP
PGKGAKWDRAALPRLIELIRKIEPTIEIRWDTRDAIAFYLPGFSRFWGRFKTKESDCLEC
RFNGKPGAFNLTHLEAAGMDGEFLQDRKDGVDVMLLRFTNANPMVGNKLRDLLQRHLQGF
RERFAGDSDAEAD
NT seq
7062 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaagtcgagtggatgatctgttcactacccgaaccagcggatatgatgaccac
ctgtcgcttgagttgcttcgaggatggagccgctggttcacgatggatactcattcgatc
attgttcgtggggcgcgtgaacacaacctgcgcaacgtcaatctggaactcccccgcaat
caactcatctgcttcaccggcgtgagtggttcggggaaaagctcgctggcgtttgatacg
ctgtacgccgaaggtcagcggcggtatgtcgaatcgctctccagttacgcccgacaattc
ttggggcaactccccaaaccggatgtcgattacatcggtgggctttcgcctgcgatcagc
attcagcaaaaaactgcctcgcgcaatccgcgttcaactgtcggcacggtgacggaaatc
tccgactttttgcgggttctttacgcccgcatcggcaaaggacattgtccacaatgtcaa
cgcccgatcaccgctcaaacgcgggatcaaatcatcggtcgcattctcgcgctgccacca
gggaccgcatttctgattcttgccccgatggtgcgcgggcaaaagggggagttccgcgat
ttctttgccgatatgctcaagcgcggcttcgttcgcgctcgggtggatggccagatcgtg
cgactcaccgacgatttgcaactcaatcgccgaatcaagcacgacattgacttggtaatc
gaccgcctgaagaatgatccgaaaaatcgcacccgactcgcggaagcggtcgagcaggcg
ctcgggctagccgaagggaatttgattgtttccatcgaagccgatcgcgccaaagcggcg
gaagtgcaagccgaggtgggcgaagatgatgccgaggttcgaacatcccgcggccccgat
gaactgctgctctccgcgcactatgcctgcgtgcattgcaatatcagctacgatccaccc
acgccgcagttattcagcttcaattcgcctcgcggaatgtgtctgacgtgcgatggtctt
ggaacgcaattcacgttcgatcccgatctgctcattcccgatcaaaatctcagcatcgcc
aaaggtgcggtgccgatcatcggctcgctgaccgggatgggccgttggcgcaagcacatc
tacgagggagtggccaaggcgctggaaatcgacctgaaaaagccttggaaacaactcagc
gaccgcgaaaaacaactgtacttgtacggtgccggcgatcaaaaaatcaccttcgaatgg
aagcaacgcggcggcggggtctggagacacgccgcaccttgggaaggggtgattccccaa
ttattggcatcgttcaagaagacggcagccggcccgcgtcggatgcagctcgaaaaatac
atgcgcatcgtccgctgtcccagttgcaaaggacaccggctgaattcccaagcgcgtgcc
gttcaggtcggcgagaaaaccttggtcgaattgggatcgatgccgattggcgatctcgca
ccgtggctcgaccgtctcgaaccgtcattgagccgcacggaatcggtcattgcgggcgaa
ttgctgaaagaaatccgcgctcgactcggattcttgctcaatgtcgggctgcactatttg
tcgttggatcgctccgcgcccacgctctccggcggcgaagcgcagcgcattcgtctcgct
ggccaaatcgggtccgggctcgtcggggtgctctatattcttgatgaacccagtatcggg
ttgcatccacgcgataatttgcgactcttgcgcagtctcgaaaaattgcgggatatgggg
aacacggttcttgtcgtggaacacgatgaggacacgatgcgcgcggccgatttcctggtg
gatttcgggccggggccgggggtgaaaggtggccaaatcgtttcggttgggacgccatac
gaagttgtccgcgatccgaatagtcttactggcgcgtatttaagcgggcggaaagaaatc
gcgattccgaccaatcgccgaccgatgaccgagcgaaagttggtcattgagggcgcacgc
catcataatttgcgcaatctgcgtgtggagattccgctcggctgctttgtcgccgtcacg
ggggtgagcgggtctgggaaatcgtcgctcgtcaatgatattctgatgcgaggcttggtg
aaattgcttcgcccgacgggtcgcaaagccgccgccgaagaaaccgacgatgatgacgat
accgaatcggcaatcgcggaaattgcgggcgattgcgatgcgattcttgggtatgagcaa
atcgataaagtcatcgatattgatcagaaaccgattggtcgcacgccgcgatccaatcca
tcgacttacatcaaagtttgggacgagattcgcattctgttcgccgaaatgaacgaggcg
aaagtgcgtggttatcagcccggacgcttcagtttcaatcgccccggtggccgatgcgaa
tcgtgcgaaggcaacggctcgaacaaactggagatggattttctcgcggatgtttgggtg
caatgccccgtctgcgaaggcaaacgcttcaaccgcgagacattgcaggtgcgctatcgt
ggcaaaaacatccacgatgtgctcgaaatggatgtgcaggaagcgctcgaactcttcgag
aatcaccccaaaatccgcaacatgctgcaaacgctgcatgatgtggggttggattatctc
aaactgggacaaccctcgccgacgttgtccggtggcgaggcccaacggatcaaattagcc
aaagaattgtgccgacgttcaagcggcaagacactctacgtcttagacgaaccgacgacc
ggactccacttcgaagacattcgcaaattgctcgaagtgctgcacggttttgtcaatgcg
ggcaattcggtcattgtcatcgaacacaatttggatgtcatcaagactgccgattggctc
atcgacatggggccggatggcggctccggtggcggtcaggtggtggtggcagggacgccc
gaaacggttgccgaatgcacgcagtcgttcaccggcgaggcgttgcggccgattttgcaa
cgaatcatccccgaaattccgaaaaaaccgaaatcgaagcgcggaaaagcggcgattccg
aatgaacgaatcacgcatttgcgggtggatggtgcgtcgcagcacaatctgaagcatatt
tccgtggcgattccgcgggaagaaatgaccgtctgttcggggccgagtggttccgggaaa
agtacgctcgcgctcgacacgatctatgcggaaggccagcgccgctatgtcgaatcgctc
tccagctacgcgcggcaatttcttggccaggtgcagaagccgaaagtcgaatccatcacc
ggcttgtcaccagccatcagcatcgaacagaaaacaaccagcaaatcaccgcgctcgacc
gtcgggacgatcacggaaatctacgattatctgcgggtgttgtacgcgcgattaggccaa
ttgtactgccccgcctgcgcgattccggtgggcacccagacggccgatgagattattgaa
cagattttggggcttcccgaaggcaccaaactgtacatcatggccccactcgaacgcaaa
ggccaagaaaagtacgaatcactcttcgatgaagcgcggaggtccggctttttgcgcatc
cgcgtggatggcaaatcgttctcgctggatgagccacccacgatcgaccatcgtcggcag
catcgcgtcgagattatcgtcgatcgaaacgtcgtgcgtgaaggcactcgcacccgaatt
gccgatagcgtcgaaaccgcgctctctgtcgggcgtggggtgatgcatttagcctatgtc
gaagcggatcgcgatgaagcaacgtggaaagtcgatgtcttttcgcagcatttggcctgt
cattcctgcggtcgcagtttcgagcaactgaatccgcatcatttctcgttcaatagtccg
ttgggatggtgtccgacttgcgaaggcttaggcgtgcaacggggcgccaactccgcattg
ttgatgcgcgattcgcagcagtccctgcgcgacggggcgattgccgcgtggccaccgctg
acgccggaaaatccgttcctggcgtatgcggaagcgattgccaagcatctgggcatcaac
ctggatacgccgttcgacaaacttgacgcaacggttcagcgggcattgctttacggcacc
ggcgagacggaactcacgctgcatccggccaaaccgagcagcaagaaattccaatacaaa
ggcgtcttcccggccctggatgaagcggcgcgggtcagctacgtctatcgaagtcggctc
gatcatttgatggacgaagtcccctgctccgcctgtcatggttcccgactgcgcgacgac
gcctcatcggttcagttcgatcgggtcacgctccgggaattgtgtgagctgccaatcggc
gaagtgctcgcccgggtcaagcggctcgaactaccgccgaccgatcgccaagtggccgag
gagttgttgcgcgaaatcaccaatcgcttgcaatttctcatcgatgtcggcttggattat
ctctcgctggggcgaccggggccgaccttatccggcggcgaggcgcagcgaatccggctg
gccagtcaaatcggctcgggattgactggggtgttgtacgtgctggatgagccgacgatt
ggcttgcatccccgcgataacacccgactgctcaaggcgttgcagaaactccgtgatctg
ggcaatacactgctcctagtcgagcatgaccgggaagtgattcaatccgcggattatctg
ctcgatttcgggcctggcgcgggggatcgcggcggcgagattaccgcggcggggactcca
tcgcagattcaaaaggtcaagcaatcgctgacagggcaatatctctccgggaaaatggcc
attgcggtgccgacgaatcgccgggtgccgactttgcagccaaaagaaacgcccgaacag
cgcatggcgaatctgcggacgctccgcgtggtcggcgcgaggcatcacaatctgaagaat
gtcaccgtcgatttcccgttgggctgcttgatttcggtgacgggagtgagcggatcgggc
aaaagttcgctaattaacgaagtgttgtacaatacactcgcccgaaagctgcatcgtgcc
cgaacatccggggcggcccatgatgaaatcgtcgggctggatcaaatcgacaagatcatc
aatgtcgatcaagatccgatcggcaattctccgagttccaatccggcgacgtataccggt
gtcttcgagctgatccgccaactgtattcgcagatgccggaatcgaaggtgcgcggttat
cagccccgtcgctttagcttcaatcaccccggcggacgatgcgaagcctgcgaaggcaat
ggccagaaaaagatcgagatgcactttctgccggatgtctgggtggaatgcgatgtctgc
catggcaaacgctacaacccggagacgctcgcggtccagtacaagggcaaatcgatctcc
gatgtgctgacgatgcgcgtgagcgaagcgttggagttgttccgaaacatcccgaaaatc
cgccatattttgcaaaccttagtcgatgtcggactcgactatttgtcgttgggacaatcc
gcgccgacgatgtcgggtggcgaagcacaacgggtcaaactcgccgccgaactgtctcgc
cccagcaccgggcgaacgctgtatctgctggatgaaccgacgaccgggttgcattttgat
gatgttcgcaagttgctggaagtgctgcatcggttggtcgatcttggcaacacagttatt
gtggtcgaacacaatctggacgtgatgaaatcgtcggattggatcatcgatatcgggcca
gaagcgggactgaacggcgggcaagtggtcgcgtgtgggacgccggaagaggtggttgcc
caggcgaagcgggccaagccagtctcgcacaccgggaaagtgcttgcggaagtccttgcg
gcagggccatttgcggaacggactcgtttcgaccccttgcagatgctgcaagcgcaagaa
ggcgatgtctcgctggaatcggtgggcgcggatgcgaaattgccgtgggaagcggatgga
gtccgttggcacacgcaagaccgcatcaccaccaccgggaaacgatgcctgtgggatggc
tcgattctgacgtggctgaccgacaaaatcgccaaaacggggaatttttccgaaccgaat
tggaatagccggacgattgtcgaagttgcagccaagaagaaatcgctgggctggttcttg
cacgcgatgacggggatggaatcgtatttgcgactggtgttccatgtgcataaacagcag
ttcaaatccgagaaattggcccgcgatttggcgctgccggaattcgcttcgattcccgaa
ttggcgacgttgaatcgcgaagatcgagtcagcgtcaagaaacgcaacggtatctggcac
gaggtggtgatcctcgcgtatcgccgggaagagttggatacaccggcattcgagcaattc
ttgactgatgccatgcgcgcgttccaggtgcagttgacagaagctcagacgaatgtcgaa
aatgtcatgccatggaaactcaacggcgaaaaatggcacttgggtgagaaaggcttccca
ccgggcaagggtgcgaagtgggatcgagccgcgttgccccgattgatcgagttgattcgc
aagattgaaccgacgatcgaaattcgctgggacacccgcgacgcgattgcgttctatctg
cccggattttcccgattctgggggcgattcaagacaaaagaatccgactgtctcgaatgt
cgcttcaacgggaagcccggagcgtttaacctaacccatctggaagcggcgggcatggac
ggcgaatttttacaggatcgcaaagacggcgtggatgtgatgctgttgcggtttacgaat
gcgaatccgatggtcgggaataaactgcgggatctgcttcagcggcatttgcagggattc
cgagagcgattcgcgggtgattccgacgcagaggcggattga
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integrated database retrieval system
