Tuwongella immobilis: GMBLW1_16610
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Entry
GMBLW1_16610 CDS
T06428
Name
(GenBank) atp-dependent dna helicase : ATP-dependent DNA helicase RecQ OS=Rhodopirellula maiorica SM1 GN=RMSM_02027 PE=4 SV=1: DEAD: Helicase_C: RQC: HRDC
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tim
Tuwongella immobilis
Pathway
tim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GMBLW1_16610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tim03019
]
GMBLW1_16610
03400 DNA repair and recombination proteins [BR:
tim03400
]
GMBLW1_16610
Enzymes [BR:
tim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GMBLW1_16610
Messenger RNA biogenesis [BR:
tim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GMBLW1_16610
DNA repair and recombination proteins [BR:
tim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GMBLW1_16610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
VTS00983
UniProt:
A0A6C2YM46
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All DBs
Position
1:complement(2175830..2177710)
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AA seq
626 aa
AA seq
DB search
MKPMGDDSEMEALRGVIRQHWGFRELRPLQEHAMRSVLARRDSLVVLPTGGGKSLCFQGP
AVYRKRETTIVVSPLIALMKDQVDNLRAVGIAAGTLDSSQTADERATVERQLFSGELRLL
FVSPERLAMSGFQGMLQRLGVKTFAIDEAHCISHWGHDFRPEYRELIRLRERFPDASFHA
YTATATERVREDIVAQLGLQNPDILVGRFERLNLTFRVLTRNQVNKQVLEVIDRHKGEAG
IIYCIRRKDVDELTVQLRGRGINARPYHAGLTPLERAATQNAFRSESCDIVVATVAFGMG
IDRSNVRFVLHTGMPKSIEHYQQEAGRAGRDGLEAECVLLYSGGDLLTWKSVIEKSAEEA
EVDPEFVPSAIQHLNEMGGYCRAAHCRHRVLTEHFGQPFELPNCNACDFCLGEVEVETDS
QDIARKILSGVARTQQRFGIGHVVDVLHGKTSDRIRQYGHDQLTTFGLLKAYRAEDIRDW
TYQLLMLDVLEQSDGEYPTLRLNQASWRVMRNEQQVCLTRPTRKKKTKQTESESISWAGV
DRDLFDALRNLRRQLASEKGVPPYVVFPDNTLRELARYQPKSLSGMQAIYGIGEAKLRDY
GQIFLDAIQEYLAQHPQPTPIAKRGA
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatgggtgatgattcggaaatggaagcacttcgcggcgtgattcgccagcat
tggggcttccgcgaattgcgaccgttgcaagagcatgccatgcgctccgtgctggcccgt
cgagattcgttggtggttctccccactggcggcggcaagtcgctctgcttccaagggcca
gccgtctaccgcaagcgggaaaccaccattgttgtctcgccgttgattgcgctcatgaag
gatcaggtggataacctgcgtgccgttggcattgccgccggaacattggatagttcgcaa
accgccgacgaacgcgccaccgtcgaacgccaactcttctccggcgagttgcgattgctc
ttcgtctcgcccgaacgactggcgatgtctggcttccaaggcatgctgcaacgtctgggc
gtcaaaacctttgcgatcgacgaagcccactgcatcagccattgggggcacgacttccgc
ccggaataccgcgaactcatccgactccgcgaacgctttcccgatgcgtcgttccatgcc
tacaccgccaccgccaccgagcgcgtgcgcgaagacattgtcgcccagcttggcctgcaa
aaccccgacattctcgtcggacgattcgagcgactcaacctcacctttcgcgttctcacc
cgcaatcaggtgaacaaacaggtgttggaagtcatcgatcgacacaagggtgaagcggga
atcatctactgcattcgtcgcaaagatgtggacgaactaacggtgcaattgcgcggccgg
ggcatcaacgcgcggccgtaccacgcgggactcaccccgttggaacgggccgccactcag
aatgcgttccgttccgaatcgtgcgatatcgtcgtcgccacagtcgccttcggaatgggg
atcgatcgctcgaatgtgcgatttgtgctgcacacgggcatgccaaaatcgatcgaacat
tatcagcaagaagcggggcgggccggtcgcgacggactcgaagcggaatgtgtgctgctg
tattccggcggcgatttgttgacgtggaaatcggtcatcgaaaagtccgccgaggaagcg
gaagtggatcccgaattcgtccccagtgccatacaacatctcaacgagatgggtgggtat
tgtcgggcggcccactgtcggcatcgcgtgctgacggagcatttcggccaaccgtttgag
ctgcccaactgcaacgcctgcgatttctgcctgggcgaagtcgaagtcgagaccgattcg
caagacattgcccgcaagattctctccggcgtcgcccgcacccagcagcgattcggcatc
ggccacgtcgtcgatgtcctccacggcaaaaccagcgaccgcatccggcaatacgggcac
gatcaactcaccacctttggtttgctgaaagcctatcgcgcggaagatattcgggattgg
acgtatcaactgctcatgctcgatgtcctcgaacagtccgacggcgaatatcccacgcta
cggctcaaccaggcttcctggcgggtgatgcgcaacgagcagcaggtgtgcctgacacgc
cccacccgaaagaaaaagaccaaacagaccgaatcggaatcgatctcctgggcgggggtc
gatcgcgatttattcgatgcgttgcggaatctgcgacgtcagttggccagcgaaaaggga
gtgccgccctatgtggtgttccccgataatacgctgcgggaactggcccggtatcaaccg
aaatcgctctctgggatgcaggccatctacggcatcggcgaagcgaaactgcgcgattat
gggcaaatcttcctggatgccatccaagaatatctcgcccagcatccccagccgacccca
attgccaaacgaggtgcctaa
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