Tuwongella immobilis: GMBLW1_18560
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Entry
GMBLW1_18560 CDS
T06428
Name
(GenBank) rna polymerase alpha subunit domain protein : DNA-directed RNA polymerase subunit alpha (Fragment) OS=uncultured planctomycete GN=HGMM_F13D05C26 PE=4 SV=1: TPR_11: TPR_1: RNA_pol_A_CTD: RNA_pol_A_CTD
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
tim
Tuwongella immobilis
Pathway
tim03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tim00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GMBLW1_18560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tim03021
]
GMBLW1_18560
03400 DNA repair and recombination proteins [BR:
tim03400
]
GMBLW1_18560
Enzymes [BR:
tim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GMBLW1_18560
Transcription machinery [BR:
tim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GMBLW1_18560
DNA repair and recombination proteins [BR:
tim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GMBLW1_18560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
TPR_2
TPR_8
TPR_16
TPR_1
TPR_14
TPR_6
TPR_19
TPR_12
TPR_7
TPR_11
TPR_17
ANAPC3
TPR_9
BDI_1685-like_C
BTAD
TPR_10
TPR-S
Mg_chelatase_C
IMS_HHH_1
DUF4288
Motif
Other DBs
NCBI-ProteinID:
VTS00398
UniProt:
A0A6C2YL50
LinkDB
All DBs
Position
1:1905560..1906891
Genome browser
AA seq
443 aa
AA seq
DB search
MDTPIDLRALLVEREDCDSGTVSKLREGLAQGGNQPRALREVHELLEKKLETADPVKAKK
WHLKLGIVCFFLGRMEKAVDHLKQTEGALSQFYLGRALVNRQAWDEALEAFDTAEKSGYA
APQVQLQRAGIYRQKNEVATARAILDKLKEMGSHSAEYHFQLAGCHQAEGMRLEFIKSLE
RAVELDPSHTGALFQLGYANDLAGNDEDAIGYYERCLKYPPIYKGVLNNLGVLYEDTGRF
DKAMDCYNRLIKADPLDERAKLFARDAEQSMTMYYNPDEEQTNIQFRQVLELPVSDFELS
VRSRNCLKKMNIRTLGDLTRITEAQLLASKNFGETSLLEIRQIMDAKGLRVGQSLEQGAQ
FETRYRPQQPMSAEEQALLNKSVSELNLSVRARKCMNRLAINTLSELVSRSADDLLEAKN
FGMTSLTEVRDKLSQLGLKLRGD
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
gtggacacgcccattgatttgcgagcgttgctggtcgaacgcgaggattgtgattcaggc
accgtctcaaaactgcgggaagggttggcacaaggcggcaatcaaccgcgcgccttgcgc
gaagtacatgagctattggaaaagaaactcgaaaccgccgaccccgtcaaagccaagaaa
tggcatctgaaattggggattgtctgcttcttcctgggccgcatggaaaaagccgtcgat
cacctcaagcagaccgaaggggcactgtcccaattctatctgggacgggcactggtgaat
cggcaagcctgggatgaggcgctggaagccttcgacacggcggaaaagtccggctacgcc
gccccgcaagtgcaattgcaacgtgccgggatttatcgtcagaagaacgaagtggcgact
gcccgcgcgattctggataagctgaaggaaatgggcagccacagcgcagaatatcacttc
caattggcgggctgccaccaagcggaagggatgcgtctggagttcatcaagtcgttggag
cgtgccgtcgaactcgaccccagccataccggggcgctgttccaactcgggtacgccaat
gatctggcgggcaatgatgaagacgccattggctactacgaacgctgcctgaagtatccg
cccatctacaaaggtgtgctcaacaatttgggcgtgctgtacgaagacacgggccgattc
gacaaggcgatggattgctacaatcgtctgattaaggcggatccgttggatgaacgcgcc
aagctgttcgcccgcgatgccgaacaatcgatgacgatgtattataatcccgacgaagaa
cagacgaatatccaattccgtcaggtgttggaacttcccgtctcggacttcgagttgtcg
gttcgcagccgcaactgcttgaagaaaatgaacatccgcacgctgggcgatctgacgcgg
atcaccgaagcccaactgctggcgagcaaaaacttcggcgaaacctcgctgctggaaatt
cgtcagattatggatgccaaggggttgcgcgttggtcaatcgttggagcaaggggcgcaa
ttcgaaacgcgctaccgcccgcaacagccgatgagcgcggaagaacaagcgttgttgaac
aagtcggtcagcgaattgaacctgtcggtgcgtgctcgcaagtgcatgaaccggctggca
atcaacacgctttcggaattggtgtcgcgttcggcagatgatttgctggaagcgaaaaac
tttggcatgacctcgctgacggaagtccgcgacaaattgtcgcaacttgggttgaaattg
cgtggcgactga
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