Tuwongella immobilis: GMBLW1_40190
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Entry
GMBLW1_40190 CDS
T06428
Name
(GenBank) trna-splicing ligase : RNA-splicing ligase RtcB (Fragment) OS=uncultured planctomycete GN=HGMM_F01A04C27 PE=3 SV=1: RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tim
Tuwongella immobilis
Brite
KEGG Orthology (KO) [BR:
tim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tim03016
]
GMBLW1_40190
Enzymes [BR:
tim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GMBLW1_40190
Transfer RNA biogenesis [BR:
tim03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GMBLW1_40190
Prokaryotic type
tRNA splicing ligases
GMBLW1_40190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
VTS07704
UniProt:
A0A6C2YUQ2
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All DBs
Position
1:5898936..5900399
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AA seq
487 aa
AA seq
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MAKESYNGPLEQVDANCWRIPRSYKPEMRVDGLIFANERLLDAIKKDQAPDQVANVATLP
GIQMASLAMPDIHWGYGFCIGGVCATDPLEGGVISPGGVGYDINCGVRLVKTNLFFHEIQ
GSLEELIKTLFENVPAGVGRSGKYKFSPKEMRPLLAEGPSFVMERGMGVLRDLDHTEANG
RIDDADPDEVSPRAIERGAEQCGTLGSGNHFMEVQVVDQIFDETVATAFGLEPGQICVMI
HSGSRGLGYQVCDDALVQFRKVPEKYGIVLPDKQLACAPADSPEGRKYIGAMRAAANYGF
CNRQLLMTQAREVFSHVFGRSWEDLGMEMLYDVAHNIAKLETHTVDGVTKKVWVHRKGAT
RAFPAGHPEVPEAYRAVGQPVIIPGDMGRASWVLVGSEESMRKSFGTTCHGAGRAMSRTA
AMKLNSGDAVQRQLRSQGVIAMGQSRRGLAEEQPKAYKNVDHVVEVVHDAGLSRKVARMR
PIGVIKG
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggccaaagaaagctacaacggaccgctggaacaggtggatgccaactgctggcggatt
cctcgcagttataaacccgaaatgcgcgtcgatgggctaatctttgccaacgagcgcctg
ctcgatgcgatcaagaaagatcaagcgccggatcaggtggcgaatgtggctaccttgccg
ggcattcaaatggccagcctggccatgccggatatccactggggctacggcttttgcatc
ggcggtgtctgtgccaccgatccgctcgaaggcggcgtgatttcgcccggcggagtgggg
tacgacatcaattgcggcgtgcgattggtcaaaaccaatctgttcttccacgaaattcaa
ggctcgctggaagaactcatcaaaacgctgtttgagaacgtccccgccggtgtcggacgc
agcggcaagtacaaattttcgcccaaagaaatgagaccgctgttggccgagggaccgtcg
tttgtcatggaacgcggcatgggcgtgctgcgcgatttggaccacaccgaagccaacggc
cgaatcgatgacgccgatcccgacgaagtcagcccgcgcgccatcgaacgcggcgcggaa
cagtgcggcacactcggctcgggcaaccactttatggaagtccaagtcgtcgatcaaatt
tttgacgaaaccgtcgccacggccttcggattggaaccggggcaaatctgcgtgatgatc
cactccgggtcgcgcgggttgggctatcaggtctgcgatgatgccttggtgcagttccgc
aaggtgccggaaaaatacggtatcgtcttgccggataagcagttagcgtgcgctccagcc
gacagtcccgaaggccgcaagtacatcggcgccatgcgggcggcggccaattacggattc
tgcaatcggcaattgctgatgacgcaggcccgcgaggtattcagccacgtattcgggcga
tcatgggaagatctgggcatggaaatgctctacgatgtcgcccacaatatcgccaaactg
gaaacgcataccgtggatggtgtcaccaaaaaagtatgggtccaccgcaaaggggccacc
cgcgccttcccagcgggacaccctgaagtgcccgaagcctaccgcgcggtgggtcaaccg
gtgatcattcccggcgatatgggccgcgccagctgggttctcgtcggatcagaagagagc
atgcgcaagagtttcggcaccacctgccacggcgcgggccgcgcaatgagccgcaccgcc
gcgatgaaactcaacagcggggacgctgtccagcgtcaactgcgctcgcaaggggtaatc
gccatgggccaaagccgccgcggcctagccgaggaacaacccaaggcgtacaaaaacgtg
gatcacgtcgtggaggtcgtgcacgatgctgggctttcgcgcaaggtcgcgcgaatgcgt
cccatcggcgtgatcaagggataa
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