Tuwongella immobilis: GMBLW1_49170
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Entry
GMBLW1_49170 CDS
T06428
Name
(GenBank) ribonuclease d : Ribonuclease D OS=Blastopirellula marina DSM 3645 GN=DSM3645_23731 PE=4 SV=1: DNA_pol_A_exo1: HRDC
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
tim
Tuwongella immobilis
Brite
KEGG Orthology (KO) [BR:
tim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tim03016
]
GMBLW1_49170
Enzymes [BR:
tim01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
GMBLW1_49170
Transfer RNA biogenesis [BR:
tim03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GMBLW1_49170
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
DUF7059
Motif
Other DBs
NCBI-ProteinID:
VTS05915
UniProt:
A0A6C2YS29
LinkDB
All DBs
Position
1:4728917..4730119
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AA seq
400 aa
AA seq
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MDALPEKMVTTSSQLLDCCEAIAASDRVGFDTEFVGEDTFHPALCLIQISTARALFVIDP
FSVGPLDGFWRLLHDPARLVIVHAGREEIRLCTRLSGRPPKSLFDVQIAAGLLGLGFPLS
HGGLLLQTLGVSLSKGETLTNWRQRPLTRSQLRYAFDDVRYLLPLHDYLSERLTQRDRLD
WAAEEFLELIAHSLGDAPEYQRWRKLRGVNGFDRRQLALARSLYYWREDAAERLNRPARS
VVRDELLVEVVRRNPKRERDLLALRGLPRDEFENILDALQSARELPESQCPDLVEREVDP
PQLALVTTLLGAVLSDWCARNELTPSQTATNSDLRALVRAHFTGDPLTSDSALARGWRSM
FVRPELEAFLRGHRSVRVGDLRSGAPLRIESFPTPPESSL
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgttaccggaaaagatggtcaccacgtcaagtcaattgctcgattgttgcgag
gcaattgcggcgtcggaccgagttggatttgacaccgagttcgtgggggaagatacgttc
cacccggcgttgtgcttgattcaaatttcgacggctcgcgcgttatttgtcatcgacccg
ttcagtgtcgggccgctggatggattctggcgactgctgcacgatccggcgcggctggtg
attgtccatgccgggcgcgaggagattcgcctctgcacgcgcctcagcggccgaccgccg
aaatccctcttcgatgtccagattgccgctggattattggggctgggcttcccgctcagt
cacgggggactattgctgcaaacgctgggggtctccttatccaaaggtgagacactcacc
aactggcgacaacgcccgctcacacgatcgcaattgcgttatgcgtttgacgatgtccgc
tatctgctgccgctgcacgactacctctccgagcgattgacgcagcgcgaccgcctggac
tgggccgccgaagaattcctggaattgatcgcccattcgttgggggatgccccggaatat
caacgctggcggaaactccgcggagtcaacggcttcgatcgccgacaactcgcacttgca
cgatcgctctattattggcgagaagatgctgccgagcgactcaaccgcccggctcgatcg
gttgttcgagacgaattactggtcgaagtcgtccgccgcaaccccaagcgagaacgggat
ttgctggcgctgcgtggattgcctcgggatgaatttgagaacattctggacgccttgcaa
tcggcccgcgagttgcccgaatcgcaatgcccggacttagtcgaacgcgaagtcgatccg
ccgcaattggcgctggtgacgaccttgttgggggccgtgctgagcgactggtgcgctcgc
aacgaattgaccccctcgcaaaccgcaaccaacagcgatctgcgggcgttggtgcgggcc
cattttacgggcgacccgctgactagcgattccgcgttggctcgcgggtggcggagcatg
tttgtccgtccggaattggaagcctttttgcggggccatcgcagtgtccgcgtgggggat
ttacgctctggagcgccgcttcggattgaatccttcccgacaccgccggaatcttcgcta
taa
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