Thiomicrolovo immobilis: WCX72_02500
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Entry
WCX72_02500 CDS
T11235
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
timm Thiomicrolovo immobilis
Pathway
timm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
timm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WCX72_02500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
timm03400
]
WCX72_02500
Enzymes [BR:
timm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WCX72_02500
DNA repair and recombination proteins [BR:
timm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WCX72_02500
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
CarD_TRCF_RID
UvrB_inter
TRCF
Helicase_C
ResIII
SNF2-rel_dom
UB2H
Motif
Other DBs
NCBI-ProteinID:
XAU05869
LinkDB
All DBs
Position
485907..488891
Genome browser
AA seq
994 aa
AA seq
DB search
MQAKLYAYLKKGGLPDVLICEDAAEAQQLRDLCRFKEIDAVVLPDFRATWLDDLRPFSEE
LSQMAEALRHYYEADSKPLVIAPFKSLLFPLPKTNLLRTKQIAFGDRLDLAALKTELLHW
GYSFVDLVEMEGEVSFRGDIIDVFAPGTESPYRISLFDDEIEQIKAFEVETQRTVGEELE
GFELHSAPYAFDEAGYERIVAAVEASTSDSFVKDLDSLGFWYLGDDAENFLEGKKVASVK
RLDAMIGEAYTLNTPQLPQEGFASVAVLPEDDRVKALAVTDVKTLLEVHPNKKVTVIASS
DAQLKQAGIFDTKGMTVKRSGEIVNLITDTELIISLNKPVRKKRRRKSSLLLDDLKPGDY
VVHEEHGVGIFEAIEQAEILGSVRDFIAIRYQGDERVLLPVENLDAIDRYIAGAGAPPVL
DRLGKGSFGRLKEKVKKRLFEIASEIVNTAAQRALISAPVIETDAKELAAFQSRAGFEYT
EDQARSIAEIIAEIGSGHVMDRLLSGDVGFGKTEVAMNAMFAAASAGYQSAVIVPTTLLS
SQHFASLKARFAEYDFHIAKIDRFVTPKVKKAVEAGLAEGSIDMVVGTHALFGTKFAKLG
IVVIDEEHKFGVKQKEKLKTLYEKTHLLTMSATPIPRSLNQALSSIKTLSTLMTPPGERQ
GVRTFVKAYDEKLVKEVILRELRRGGQVFYVYNSIDHMPIKLGELKAILPDLRILMLHSQ
VGAVETEKELLKFQAGEYDLMLATSIIESGIHMPRVNTMIIDGADRFGIADLHQLRGRVG
RGHTEGFAYFIVEDKELITEEAKKRLVALESNSFLGSGSVLAYHDLEIRGGGNLVGDAQS
GHIKNIGYSLYLRMLEDAIKELSNKKETPKAKVDLKLAVSAYISDELVAEDRLRLELYRR
LSLCENPTEVYEIEEEVTERFGRPDGPTKQFFELMVIKLMGLEKHIKMLSSYGQNITVEY
LSGAKEFVTADSKDDDDIIKAVLHYLRTAKPKVL
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgcaggccaagctctacgcctacctgaaaaagggtggcctccccgacgtccttatctgc
gaagacgccgccgaagcgcagcagctccgcgacctctgccgcttcaaggagatcgacgcg
gtcgtcctccccgacttccgcgcgacctggcttgacgacctccgccccttcagcgaagag
ctgagccagatggccgaggcgctgcggcactactacgaggcagatagcaagcccctcgtc
atcgcccccttcaagagcctccttttcccgctgcccaaaacgaacctcctgcgcacgaag
cagatcgccttcggcgaccgcctcgacctcgcagccctcaaaacggaactgctgcactgg
ggctacagcttcgtcgacctggtggagatggagggggaggtctccttccgcggcgacatc
atcgacgtcttcgcccccggcacggagagcccctaccgcatctccctcttcgacgacgag
atcgagcagatcaaggccttcgaggtggagacccagcgcaccgtcggcgaggagctcgag
ggattcgaactgcacagcgccccctacgccttcgacgaagcgggctatgagcgcatcgtc
gcggcggtagaagcctcaacgagcgacagcttcgtcaaggacctcgactccctgggcttc
tggtacctcggtgacgacgcggagaacttcctcgagggcaaaaaggtcgcctcagtcaaa
cgcctcgacgcgatgatcggcgaagcctataccctgaacacgccgcagctgccgcaggaa
ggcttcgcgtccgtcgcggtcctccccgaagacgaccgggtcaaagccctcgcggtcacc
gacgtcaaaaccctgctggaggtccacccgaacaagaaagtgacagtaattgccagcagc
gatgcgcagctgaagcaggcgggtatcttcgacacgaaggggatgacggtcaaacgctcc
ggcgagatcgtcaacctcattaccgacactgagctcatcatctccctgaacaaaccggtg
cgcaaaaagcgccgccgcaagagcagcctgctcctcgacgacctcaagcccggcgactac
gtcgtccacgaggagcacggggtcgggatcttcgaggcgatcgagcaggcggagattttg
ggaagcgtgcgcgacttcatcgccatcaggtaccagggcgacgagcgggtcctgctgccg
gtggagaacctcgacgccatcgaccgctacatcgcgggggccggggcgccgccggtgctg
gaccgcctgggcaaggggagcttcggccgtctcaaggagaaggtcaagaagcgcctcttc
gagatcgcctcggagatcgtcaacaccgccgcccagcgcgcgctcatcagcgcccccgtc
atcgagaccgatgccaaggagctggcggcgttccagtcccgcgcgggctttgagtacacg
gaggaccaggcgcgctccatcgccgagatcatcgcggagatcggcagcggccacgtgatg
gaccggctcctcagcggggacgtcggcttcggcaagaccgaggtggcaatgaacgcgatg
ttcgccgcggcctccgcgggctaccagtcggccgtcatcgtcccgacgaccctgctcagc
tcccagcacttcgcctcgctcaaggcccgcttcgccgagtatgatttccacatcgccaag
atcgaccgcttcgtcacccccaaggtgaaaaaagccgtcgaggcggggttggcagaaggg
agcatcgatatggtcgtcgggacccacgcgctcttcgggacgaagttcgcaaaattgggc
atcgtcgtcatcgacgaagagcacaagttcggggtaaaacagaaagagaagctcaaaacc
ctctacgagaagacgcacctgctcaccatgagcgccacgcctatccctcgcagcctcaac
caggcgctctcttccatcaagaccctcagcaccctcatgaccccgccgggcgaacggcag
ggggtgcgcaccttcgtcaaggcctacgacgagaagcttgttaaagaggttattttgcgc
gaacttcgccggggcggccaggtcttttacgtctacaactccatcgaccatatgccgatc
aagctgggcgagctcaaggcgatcctccccgacctccgtatcttgatgctccactcgcag
gtcggcgccgtcgagacggaaaaggagctgctgaagttccaggccggtgagtacgacctc
atgctggcgacctccatcatcgagtcgggcatccacatgccgcgggtcaacacgatgatc
atcgacggggccgaccgcttcggcatcgccgacctgcaccagctccgcggccgcgtcggc
cggggccatacggaggggttcgcctacttcatcgtcgaggacaaggagctcattaccgag
gaggcgaagaagcgcctcgtcgccctggagtcgaactccttcctcggcagcggctccgta
ctggcttaccatgacctggagatcaggggcggggggaacctcgtcggcgacgcgcagagc
gggcatatcaagaacatcggctacagcctctacctgcggatgctcgaggacgccatcaag
gagctgagcaacaagaaagagacgcccaaggcgaaggtggacctcaagctcgccgtcagc
gcctacatcagcgacgagctcgtcgccgaggaccgcctgcgcctggagctctaccgccgc
ctcagcctctgcgagaacccgacggaggtctacgagatcgaggaggaggtcacggagcgc
ttcggacgcccggacggcccgacgaagcagttcttcgagctgatggtcatcaagctgatg
gggctggagaagcacatcaagatgctcagctcctacggccagaacatcacggtggagtac
ctgagcggcgccaaagagtttgtcaccgccgacagcaaagacgacgacgatatcatcaag
gcggtcctgcactacctgcgcacggcgaagccgaaagtcctgtag
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