Thiomicrolovo immobilis: WCX72_02625
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Entry
WCX72_02625 CDS
T11235
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
timm Thiomicrolovo immobilis
Pathway
timm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
timm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WCX72_02625 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
timm03021
]
WCX72_02625 (rho)
03019 Messenger RNA biogenesis [BR:
timm03019
]
WCX72_02625 (rho)
Transcription machinery [BR:
timm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
WCX72_02625 (rho)
Messenger RNA biogenesis [BR:
timm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
WCX72_02625 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
OB_RNB
Spore_III_AA
OB_RNR_1st
S1CSD-TOTE-2
AAA
Motif
Other DBs
NCBI-ProteinID:
XAU05892
LinkDB
All DBs
Position
complement(515491..516813)
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AA seq
440 aa
AA seq
DB search
MSDTSRSNHSRNNKNRTHKPVEGYTVEALREKTIDELVTMAEELGVESPNELKRQDIIFE
ILKAQTAQGGFILFTGILEVMQDGYGFLRSVDKSFSDSLNDAYVSSTQIKRFALRNGDVV
TGQVRAPKDQERYYALLKIEAINYVPPEESKKRPLFENLTPLYALEQLKLEYQPTHLTGR
MMDLFAPIGKGQRGLIVAPPRSGKTELMKEIAHGISHNHPEAELMVLLVDERPEEVTDME
RSVKGEVYSSTFDMPAKNHVKVAEMVIERAKRRVEIGKNVVILLDSITRLARAYNTVTPS
SGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIIATALIETGSRMDEVIFEEFKGTGN
SEVVLSRKISDRRIFPAIDILKSGTRKEELLIGPDVLQKVFILRSMLHKQEDEVEALRFL
YTKMQKTKSNDEFLSMMNEG
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatacttcgcgcagcaaccattcacgaaacaataaaaacaggacccataagccc
gtcgaaggctacactgtagaggccctcagagaaaagacgatcgacgaactcgtcaccatg
gccgaagagctcggtgtcgagagccccaacgagctcaaacgccaggacatcatcttcgaa
atcctcaaggcgcagacggcccagggaggctttatcctctttaccggtatcctcgaagtg
atgcaggacggctacggcttcctccgctccgtcgacaagagcttcagcgactccctcaac
gatgcctatgtctccagcacccagatcaagcgctttgccctgcgtaacggggacgtcgtc
accggccaggtccgtgcgccgaaggaccaggagcgctactacgccctgctgaagatcgaa
gcgatcaactacgtgccgcccgaagagagcaaaaagcgcccgctcttcgaaaacctcacg
cccctctatgccctggagcagctcaagctcgagtaccagccgacccatctcaccggccgc
atgatggacctcttcgcccccatcggtaaagggcagcgcgggctcatcgtcgccccgccg
cgttcgggtaaaacggagctgatgaaagagatcgcccacggtatcagccacaaccacccg
gaagcggaactgatggtcctgctcgtcgacgaacgccccgaagaggtcaccgacatggag
cgctccgtcaagggcgaggtctactcctccactttcgacatgccggcaaagaaccacgtc
aaggtcgccgaaatggtcatcgagcgtgccaagcgccgcgtcgagatcggtaagaacgtc
gtcatcctgcttgactccatcacccgcctcgcccgcgcctacaacaccgttacaccgagt
tcaggtaaggtcctctcaggtggtgtcgacgccaacgccctgcacaaaccgaagcgcttc
ttcggtgccgcccgtaatatcgagaacggcggttccctcaccatcatcgcgacagccctg
atcgagaccgggagccgcatggacgaggtcatcttcgaagagttcaagggtacgggtaac
tccgaagtggtgttgagccgcaagatctccgaccgccgtatcttcccggcgatcgacatc
ctcaagtccggtacccgcaaagaggagctcctcatcgggccggacgtcctgcaaaaagtc
tttatcctccgctccatgctgcacaagcaagaggacgaggtcgaggcgctccgtttcctc
tacaccaagatgcagaagacgaagtccaacgacgaattcctctccatgatgaacgagggc
taa
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