Thiomicrolovo immobilis: WCX72_08140
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Entry
WCX72_08140 CDS
T11235
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
timm Thiomicrolovo immobilis
Pathway
timm03030
DNA replication
timm03430
Mismatch repair
timm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
timm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WCX72_08140 (dnaE)
03430 Mismatch repair
WCX72_08140 (dnaE)
03440 Homologous recombination
WCX72_08140 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
timm03032
]
WCX72_08140 (dnaE)
03400 DNA repair and recombination proteins [BR:
timm03400
]
WCX72_08140 (dnaE)
Enzymes [BR:
timm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
WCX72_08140 (dnaE)
DNA replication proteins [BR:
timm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
WCX72_08140 (dnaE)
DNA repair and recombination proteins [BR:
timm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
WCX72_08140 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
Tsi6
Motif
Other DBs
NCBI-ProteinID:
XAU04474
LinkDB
All DBs
Position
complement(1565934..1569554)
Genome browser
AA seq
1206 aa
AA seq
DB search
MSVQPFTHLHLHTEYSLLDGANKISNLAKRVKELGMTSVAMTDHGNMFGAIDFWHQMKGE
GIKPIIGMEGYIHNGETLDDKSTRQRFHICLYAKNQKGYENLMYLSSMAYIHGFYYFPRI
TKQELREHSEGLVCTSACLQGEVSWHLNTNSERNVKFGAGGYDEAKRVALEYKEIFGEDF
YLELMRHGIADQLFIDEPLLKLSQETGIKLVATNDTHYTFPDDAQYHEAFMCIGMNKLYD
DPNRLRHSVHEFYVKSPEQMQRLYADIPEALEATQEIVDKCQLELELGNPTPPNFKFTRE
YAAKEGLNIDHADDAPLGPGATADDKKKWMGAADKNDAEFFIHRCRLGLEERLKHVPQER
HEEYRARLEYEMDVINSMKFPGYMLIVWDFVAEAKRMGVAVGPGRGSAAGSLVAYALEIT
DIDPMKYDLLFERFLNPERVSMPDIDMDFMQARRGEVIDYVVRKYGRNQVAQIITFGSLL
AKGVIRDVSRVLDMPLSQADKMAKLIPEELGITLNGKKKGDDFKPGAFQKEPKIKELIDT
DPQAKRVWEFSLKLEGLKRNAGMHAAGVVISNEELWKKTPIYKPPGEETFVTQYSLNYLE
DVDLIKFDFLGLKTLDVIDNAIKLVKTRYNEVIDWNTINVDDPKVYEVIQSGATVGMFQI
ESSGMQDLNKRLKPSNFEDLIAVLALYRPGPMESGMLDDFIERKHGRKKIFYPFEEVSFD
MLKETLEPTYGMIVYQEQVMQIVQTVGGFSLGGADIVRRAMGKKKADLMEKYNREFSEGA
QQQGLDYKKASALFDLIEKFAGYGFNKSHSAAYAMVTFQTAWLKTYYPQEFMAALLTSEK
DNTDKVVKYIDEVKRMGIELSPPDINDSQLEFSATRKDDQDYILFGLGAIKGVGTSAVKS
ILEVRKDGEFTDLQDFVNRIDPQKVNKKVLESIAKAGGFDRYQYSRRALLEQMETVIETA
KDSMQARKNAAGSLFGDDADVTTVQLRLEDAPEFGLKQILEFEKETLGFYVSGHPLDDYR
EELEQLEYTLSSDLENIADGSFAIFIGKVEEITHKISKKGNQFGIVNLMDFHGNLEVMLF
SDKLEELETMNLDEPIAFKVKVTHTEMFTRTSVTKIMSLKEVKKESKKISTKIREVPQEP
LTLRLHLDNGVERLEELYRLVRRHPGTRPLKLNIVSKLQNVVIDSAIRVNNSIMEELAGL
SDVDVA
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtccaaccctttacccacctgcacctgcacaccgaatactccctgctcgacggc
gcgaacaagatcagcaatcttgccaaacgcgtcaaagagctcgggatgacctccgtggcg
atgaccgaccacggcaacatgttcggcgccatcgacttctggcaccagatgaaaggggag
gggatcaagcccatcatcgggatggaggggtatatccacaacggcgagaccctcgatgac
aaaagcacccgacagcgttttcacatctgtctttacgcgaaaaaccagaaggggtacgag
aacctgatgtacctctcctccatggcctacatccacggcttctactacttcccgcggatc
acgaagcaggagctgcgcgagcacagcgaggggcttgtctgtacttcggcctgtctgcag
ggcgaggtgagctggcacctcaacaccaacagcgaacgtaacgtcaagttcggggccggc
ggctacgacgaggcgaagcgggtcgcgctggagtacaaggagatcttcggcgaggacttc
tacctggagttgatgcgccacggcatcgccgatcagctctttatcgacgaaccgttgctc
aagctctcccaggagacagggatcaagctcgtcgcgacgaacgatacccactatactttc
cccgacgacgcccagtaccacgaggcgttcatgtgtatcgggatgaataaactctacgac
gaccccaaccgtctgcgccactcggtccacgagttctacgtcaagagcccggagcagatg
cagcggctctacgcggatatccccgaagcgctggaggcgacccaggagatcgtcgacaag
tgtcagctcgagctcgaactgggcaacccgacgccgccaaacttcaaattcactcgcgaa
tacgccgcgaaagagggactcaatatcgaccatgccgacgatgcgccgctggggcccggc
gcgacggcagacgataagaaaaagtggatgggagccgccgacaagaacgacgcggagttc
ttcatccaccgctgccgcctggggctggaagagcgtctcaaacacgtgccgcaggagcgc
cacgaggagtaccgggcgcgcctggagtacgagatggacgtcatcaactccatgaagttc
cccggctacatgctcatcgtctgggacttcgtcgccgaagccaagcggatgggagtagcc
gtcggcccgggacgcggttccgcggcggggagcctcgtcgcctacgcgctggagattacc
gacatcgacccgatgaagtacgacctgctgttcgagcgtttcttgaaccccgaacgtgta
tcgatgcccgatatcgatatggacttcatgcaggcgcgccgcggcgaggtgatcgactac
gtcgtgcgtaaatacggccgcaaccaggtggcgcagatcatcaccttcggttccctgctg
gccaagggggtcatccgcgacgtctcccgcgtgcttgatatgccgctgagtcaggcggac
aagatggcgaagctcatccccgaagagctggggatcaccctcaacggcaagaagaaaggc
gacgatttcaaaccgggcgctttccagaaagagccgaagatcaaggaacttatcgacacg
gatccgcaggcgaagcgcgtctgggagttcagcctcaagctcgaagggcttaagcgcaat
gccggtatgcacgcggcgggggtcgttatcagcaacgaagagctctggaagaagacgcct
atctataagccgccgggggaggagaccttcgtcacccagtactcgctcaactacctcgag
gacgtcgacctgatcaagttcgacttcctcggcctcaagaccctcgacgtcatcgataac
gcgatcaagcttgtcaagacgcgttacaacgaagtgatcgactggaacacgatcaatgtg
gacgacccgaaggtctacgaagtgatccagtccggtgccacggtcgggatgttccagatc
gaatcgagcgggatgcaggatctgaacaagcggctcaagccctccaacttcgaagacctc
attgcggtcctggcgctctaccgcccgggaccgatggagtcggggatgcttgacgacttt
atcgaacgcaagcacgggcgcaagaagatcttctaccccttcgaggaggtcagcttcgat
atgctcaaggagaccctggaaccgacctacggcatgatcgtctaccaggagcaggtcatg
cagatcgtccagaccgtcgggggcttcagcctcggcggcgcggacatcgtccggcgtgcg
atgggtaagaagaaagcggacctgatggagaagtacaaccgtgaattctccgaaggggcg
cagcaacaggggctggattacaagaaggcctccgcgctctttgacctgatcgagaagttc
gccggctacggtttcaacaagtcccactcggcggcctacgcgatggtcaccttccagacg
gcatggctcaagacctactacccgcaggagttcatggcggccctgctcacctcggagaag
gataacaccgacaaggtcgtcaagtacatcgatgaggtcaagcggatgggcattgagctg
agcccgccggacatcaacgattcgcagctcgagttcagcgccacccgcaaggatgaccag
gactacattctcttcgggctcggcgccatcaaaggggtcgggacctccgcggtcaaatcg
atcctcgaggtgcgcaaggacggcgagttcacggacctgcaggacttcgtcaaccgcatc
gacccgcagaaggtgaacaagaaggtgctcgaatccatcgccaaggcgggaggcttcgac
cgctaccagtattcgcgccgcgcgctgctcgagcagatggaaacggtgatcgagacggcc
aaggactccatgcaggcgcgcaagaacgccgcgggcagtcttttcggcgacgacgccgac
gtcaccacggtacagctcaggctcgaagatgctccggagttcggtctcaagcagatcctc
gagttcgagaaggagaccctgggcttctacgtctccggccacccgctcgacgactaccgc
gaggagctcgagcagctcgaatataccctctcgtccgacctggagaacatcgccgacggc
tccttcgccatctttatcgggaaggtcgaggagatcacgcacaagatctccaagaaaggg
aaccagtttggcatcgtcaaccttatggacttccacggcaacctcgaggtgatgcttttc
agcgacaagctcgaggagctcgagacgatgaacctcgacgagccgattgccttcaaggtc
aaggtgacccatacggagatgttcacccgcacgagcgtgacgaagatcatgagcctcaaa
gaggtgaagaaagagagcaagaagatcagtacgaagatccgcgaggtgccgcaggagccg
ctgaccctgcgcctgcacctggacaacggcgtcgagcgcctcgaggagctctaccgtctt
gtccgccgccacccgggcacgcgcccgctgaagctcaacatcgtctccaagctgcaaaac
gtcgtcatcgactcggctatccgcgtcaacaactccatcatggaggagctggcaggcctc
tcggacgtcgacgtggcataa
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integrated database retrieval system
