Thiomicrolovo immobilis: WCX72_10740
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Entry
WCX72_10740 CDS
T11235
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
timm Thiomicrolovo immobilis
Pathway
timm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
timm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WCX72_10740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
timm03019
]
WCX72_10740
03016 Transfer RNA biogenesis [BR:
timm03016
]
WCX72_10740
Enzymes [BR:
timm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
WCX72_10740
Messenger RNA biogenesis [BR:
timm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
WCX72_10740
Transfer RNA biogenesis [BR:
timm03016
]
Prokaryotic type
tRNA degradation factors
WCX72_10740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_RRP5
Phage_Mu_Gp27
S1_2
Motif
Other DBs
NCBI-ProteinID:
XAU04963
LinkDB
All DBs
Position
complement(2064524..2066701)
Genome browser
AA seq
725 aa
AA seq
DB search
MDYDVLVAVENRTEEYALTSVARQANGSAWLKAGNTVVLATVVIDETEFVEEGFLPLTVQ
YIEKAYAAGKIPGGFIKREAKPSDFETLTSRIIDRSLRPLFPKGFANPVQITVMVLSADE
DADLQVLGLNAASAALYVSDIDIDIPVSAVRVAKVDGEVLFNPTLPQLKNSTLDLFLAGT
ESDLLMIEMRVQGSVETELLDTMMVDPLVDPALAAETIARYRSNAMGEDDFIVLLSEAQQ
LLATANSSYAKAFAPFKKETFKLTCIAAEPDEHLMAYVREHHSDDIAAAIAQMARTERST
ALRNLRKKILDAEPEFDEHALKKAIEAVKRETVRTQVLQTQTRADGRHLDEVRPISILTN
VLPSVHSSCLFTRGQTQALVTLTIGGNKDAQMYEELTDSSAQYESFMVHYNFPGFSVGEA
SPVQPPRRRELGHGNLAKRALEPVLEAPGQTVRLVSEILESNGSSSMATVCGGYMALKAA
DLDTADPIAGVAMGLVSEGDLHMVLTDITGLEDHDGDMDFKVAGSKEGITALQMDIKLGG
ISLELLKTALYQAKAGRAHIIDIMADAENKIELSEELPGSDFFSIDPDRVADVIGQAGKT
IREIIEKFEVAIDIDKKAGNVKVTGKNREGVKGAREHIEQIVSVPKMEKPEYHVGDIVKG
RVKKIVDFGAFIELPGGVDGLLHISKISDSHVRNVSDVLSEGDDIDVEILEFKGTKISLG
RAPAA
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggattatgatgtactggtagccgtcgagaacagaacggaagagtatgcgcttacaagc
gtggcccgacaggcaaacggaagcgcgtggctcaaggccggcaacacggttgtcctggcc
accgttgtcatcgacgagaccgaattcgtcgaagaggggtttctgccgctgacggtgcag
tacatcgagaaggcgtacgccgcgggcaagatcccgggcggtttcatcaaacgcgaggcc
aaaccgagcgatttcgaaacgctgacctcgcgcatcatcgaccgctccctgcgtccgctc
ttccccaaagggttcgccaacccggtccagattaccgtgatggttctcagcgcggatgaa
gatgccgacctgcaggtactcggcctcaacgccgcttcggcggccctgtatgtctccgac
atcgacatcgacatccccgtcagcgccgtccgcgtggcgaaggtcgacggcgaggtctta
ttcaacccgacgctgccgcagcttaaaaacagcaccctggaccttttcctcgcgggaacg
gagtcggacctgctgatgatcgagatgcgggtccagggttcggtggagacggagctgctc
gacacgatgatggtcgacccgctcgtcgatccggcgctcgccgccgagaccatcgcccgc
taccgcagcaacgcgatgggcgaggatgatttcatcgtcctgctttccgaagcccagcag
ctgctggcgacggcaaacagctcctatgcaaaggcgttcgctccgttcaagaaagagacc
ttcaagctgacctgcatcgccgcggagccggacgagcatctgatggcgtacgtcagagaa
caccacagcgacgatatcgccgcggccatcgctcaaatggcgcgcaccgagcgctccacg
gccctgcgcaatctgcgtaaaaagatcctcgacgcggaaccggagtttgacgagcacgcc
ctcaaaaaagcgatcgaagcggtcaagcgcgagacggtccgcacgcaggtcctgcagacg
cagacccgcgccgacggccgccacctcgacgaagtacgcccgatcagcatcctgaccaac
gttcttccctccgtccactcttcctgcctctttacccgggggcagacccaggcgctggtg
acactgaccatcggcggcaacaaagacgcccagatgtatgaggagcttaccgacagttcg
gcgcagtacgagagctttatggtgcactataacttcccgggcttcagcgtcggggaggcg
tcaccggtccagccgccgcgccgccgggagctcggacacggcaaccttgccaagcgtgcc
ctcgaaccggtcctggaagccccgggacagacggtccgtctcgtctccgagattctcgag
tccaacggctcctcctccatggcgaccgtctgcggcggttacatggcgctcaaagcggcg
gaccttgatacggccgatccgatcgccggcgtggcgatggggctggtcagcgagggggac
ctgcacatggtcctgaccgacattaccggtcttgaggaccacgacggggatatggacttc
aaggtcgcgggctccaaagaggggatcacggcgctgcagatggacatcaagctcggcggg
atctccctggaactgctcaaaacggccctctatcaggcgaaggcgggacgcgcccacatc
atcgatattatggccgacgccgagaacaagatcgaactgagcgaggaactgcccggcagc
gatttcttcagcatcgatcccgaccgtgtcgccgatgtcatcggccaggcgggcaagacg
atcagagagatcatcgaaaagttcgaggtcgcgatcgatatcgacaagaaagccggcaac
gtgaaggtgacgggcaagaaccgcgaaggggtcaagggggcgcgcgagcatatcgagcag
atcgtctcagtgccgaagatggaaaaacccgagtaccatgtcggcgacatcgtcaagggg
cgggtcaagaagatcgtcgatttcggcgccttcatcgaactgcccggcggagtcgacggc
ctgctgcacatctccaaaatctccgattcgcacgtgcgcaacgtttccgatgtcctgagc
gagggggacgacatcgacgtcgagatcctcgagttcaaagggaccaagatcagcctcggc
cgcgccccggccgcctaa
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