Thiomicrolovo immobilis: WCX72_10945
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Entry
WCX72_10945 CDS
T11235
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
timm Thiomicrolovo immobilis
Pathway
timm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
timm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WCX72_10945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
timm03019
]
WCX72_10945
03009 Ribosome biogenesis [BR:
timm03009
]
WCX72_10945
Enzymes [BR:
timm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WCX72_10945
Messenger RNA biogenesis [BR:
timm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WCX72_10945
Ribosome biogenesis [BR:
timm03009
]
Prokaryotic type
rRNA helicases
WCX72_10945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Flavi_DEAD
Poxvirus_B22R_N
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XAU05001
LinkDB
All DBs
Position
2104628..2106145
Genome browser
AA seq
505 aa
AA seq
DB search
MQTPPIETQDDTVAAPTASFDDFGLRPEILQSIRYAGFKVPSPIQQQAIPLVLEGRDVVG
QAHTGTGKTAAFGLPTLNQMALDRGVEALIIVPTRELANQVSDELFKYGKKLGIHTVTVY
GGSSYNRQIGLIERGAQVVIATPGRLKDILERNMLADFAPSTVILDEADEMLDMGFLDDI
NTIFDFLPTDRQTLLFSATMPKPIKALAERILVDPAFVSITQEETTNKDIAQQYYVIEEN
ERDDAIIRLLDAEELEKTIVFCRTKREVDRLSNVLSSVGYNAKGLHGDMEQRQRESVIRG
LKENAIDILVATDVAARGIHINDVSHVINYHIPFDPESYVHRIGRTGRAGQKGVAITLVT
PLEFKELQRIRKIVGTQMAHSFIPTKQQVQSKQMSRLVNEIETQKIYDEATELFNALCDD
MDQTQIAYKLISLLMKNLNVKGPQTIGVPKQRLDKIMEAMERNDRGGRRGGGKPRRGGYN
NNRRRQGGERGHGESNQGRSRGGRR
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgcagacaccccccatcgaaacacaagacgataccgtcgccgcaccaacggcctccttt
gacgatttcgggctccgcccggagatcctccagagcatccgctacgccggtttcaaagtc
cccagtcccattcagcagcaggcgatccccctcgtccttgaagggcgcgacgtcgtcggc
caggcccataccgggaccgggaaaaccgccgccttcggcctgccgacgctgaaccagatg
gcccttgaccgcggcgtcgaggcacttattatcgtcccgacccgcgaactggccaaccag
gtcagcgacgagctcttcaaatacggcaagaagctcggcattcacaccgtcaccgtctac
ggcggcagctcctacaaccgccaaatcggcctgatcgagcgcggcgcacaggtcgtcatc
gccacgccgggccgcctcaaggatatcctcgagcgcaacatgctcgccgatttcgccccc
tccaccgtcatccttgacgaagcggacgagatgcttgacatgggcttcctcgacgacatc
aacacgatcttcgacttcctgccgacggaccgccagaccctgctcttttcagccacgatg
cccaagccgatcaaggcccttgccgaacgtatcctcgtcgatcccgcctttgtctccatc
acccaggaggagacaacgaacaaggatatcgcgcagcagtattatgtcatcgaagagaat
gaacgcgacgacgccatcatccgcctgctcgacgccgaagagctggagaagaccatcgtc
ttctgccgcaccaagcgcgaagtcgaccgcctctccaatgtcctctcctccgtcggctac
aacgccaagggactccacggcgatatggagcagcgccagcgcgaatccgtcatcaggggc
ctcaaagagaatgcaattgacattcttgtcgccaccgacgttgccgcacgcgggatccat
atcaacgacgtcagccacgttatcaactaccatatccccttcgatcccgagagctatgtc
caccgcatcggccggacaggacgcgcgggccagaagggggtcgcgatcaccctcgtcacc
ccgcttgagttcaaagagctgcagcgcatccgcaagatcgtcggtacccagatggcccac
tcctttatcccgacaaaacagcaggtacagtccaaacagatgtcccgcctggtcaacgag
atcgaaacacagaagatctacgatgaagcgaccgaactctttaacgcgctgtgcgatgac
atggaccagacacagatcgcctacaagctcatctcgctgctgatgaagaacctgaacgtc
aaaggaccgcagacgatcggtgtccccaaacagcgcctggataagatcatggaagcgatg
gaacgcaacgatagaggcggacgtcgcggcggcggcaaaccgcgtcgcggcggctataac
aacaaccgccgccgccaaggcggcgaacgcggccacggcgagtcgaatcagggccgctcc
cgcggcggacgccgctag
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