Thiomonas intermedia: Tint_1067
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Entry
Tint_1067 CDS
T01227
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
tin
Thiomonas intermedia
Brite
KEGG Orthology (KO) [BR:
tin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tin03019
]
Tint_1067
Enzymes [BR:
tin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Tint_1067
Messenger RNA biogenesis [BR:
tin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Tint_1067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
AAA_30
NACHT
AAA_25
T2SSE
FtsK_SpoIIIE
SRP54
PhoH
Motif
Other DBs
NCBI-ProteinID:
ADG30461
UniProt:
D5WZP5
LinkDB
All DBs
Position
1141187..1145188
Genome browser
AA seq
1333 aa
AA seq
DB search
MPESTAARLPRQRHAAAPRKPVAATPVGEVRFPEDLPVSLRREDIARALREHQVVIVCGE
TGSGKTTQLPKIALSIGRGLGAGGTGLIGHTQPRRLAAVSIARRIAQELGSELGAIAGYK
VRFNDRLQPGASIKLMTDGILLAETQTDPLLRAYDTLIIDEAHERSLNIDVLLGYLKQLL
PRRPDLKVIVTSATIDAQRFAEHFAESAPRPAPGRPKPGGAPSGGSDGAQPGAWGPSTLA
PVIEVSGRLYPVEVRWRPFGIDKGDDRDQSAAICDAVDELWRLGSGDILVFLPGEREIRE
AEAALRKHHLDTKRVGVEILPLYARLSQAEQDRVFASGGARRIVLATNVAETSLTVPGIR
YVIDAGLARVKRYSYRNKVEMLQVEPISQAAAQQRAGRCGRVANGVCIRLYDEAEFAERP
RFTTPEIQRSSLAAVILRMKALGLDSIEQFPFIEPPPGKAIADGYQLLTELGAVDDRNAL
TPLGRELARLPLDPRIGRMILEARNREALTEVLIIAAALSVQDPRERPAEAQQAADEAHR
KFSDERSEFLGWLKLWAHYHAAIAHKKSQRKLWGELRGQYLSPLRLREWHDVHSQLHTLV
AEQGWRLNTAEATFEQIHCALLSGLLGNVGYKGDDDAQYLGARGIRFAIHPSSPLGRKAG
RWIMAAELVETTRLYARGVARIEPLWLERVGAHLLKTSLLDPHWEKKPAQVTAFERATLY
GLVVYNQRRVDFGRFDPKQAREIFLREALVAGEWDCRWPFFQHNQALIADIERLEHKARR
LDVLVDEELIYAFYDQQVPDEVHGGASFDRWYRDAVRAKPKLLFLQRDELMRHEAAGITT
ETFPNRLKLGALELQLDYTFDPGGARDGVTVQAPLAALNQIPAQRLQWLVPGLLKEKILA
LLKSLPQRPRSRLVPLPQTAEAFAAQLTTAERFGQGDLLDALREQVREHTGLALQRTDFK
LETLGPHLFFNVQVIDAHGRRIDVGRDIDKLRADHGQASRSAFAELAKLRTGLSPQKDAK
APSEAPAPPRAAAGAAAAAPSEAPIDVPTDALQGLTDWTFDALPELLELRRGAHTLIGFP
ALVDKGAAVDVEVFDTAEEAARLHRSGLRRLFALQLRDQIKHAEKNLPGFQQAAMQFMSL
GTAELLRAQIVDAALDRAFLAEPLPADKSAFAQRLSEGKPRFQLLAAEMARLAAQILDEY
AQVQKKLAAFKNQPALHADIRAQLQALLPPRFIAETPPAQIAHFPRYLQAIGRRLDKFRA
DPARDAQLSTQLAPWLTRWQREAASYHGHLPPRLQELRWLLEELRVSLFAQELRTPMPVS
LKRLEKVWAQWQG
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaatccaccgccgcccgactcccacgccagcgccatgctgccgcgccgcgcaag
cctgtggcggctacgcccgtgggcgaagtgcggtttcctgaagatctgccggtttcgctg
cggcgggaggacatcgcgcgtgcactgcgcgagcatcaggtggtgatcgtctgcggcgaa
accggatcgggcaagaccacgcagttgcccaagatcgcgctgtccatcgggcgtgggctg
ggagcgggcggaacggggctgatcggtcacacccagccgcggcggctggcggcggtgagc
atcgcccggcggattgcgcaagaactcggcagcgagctgggcgcgattgccggatacaag
gtgcgtttcaacgaccggctgcagcccggggcgtcgatcaagctgatgaccgacggcatt
ttgctcgcggaaacccagaccgatccgctgctgcgcgcctacgacaccctgatcatcgac
gaggcgcacgagcgcagcctgaacatcgacgtgctgctgggctacctcaaacagttgctg
ccgcgtcgtcctgatctgaaagtcatcgtgacttcggccaccatcgatgcgcagcggttt
gcggagcactttgccgaaagcgctccccgcccggcgccgggccgccccaagccgggcggc
gccccctcggggggcagcgacggggcgcagcccggagcgtgggggccgtccacccttgct
ccagtcatcgaagtttcggggcggctgtatccggtggaagtgcgttggcgtccgttcggc
atcgacaagggtgatgaccgcgaccagtctgcggcgatctgcgatgcggtggacgagctt
tggcggctcggctccggcgacattctggtgtttctgcctggcgagcgcgaaatccgcgaa
gccgaggcggcgctgcgcaaacaccatctcgacaccaagcgcgtcggcgtggagatcctg
ccgctgtacgcccgcctgtcgcaggccgagcaagaccgggtgtttgcctcgggcggtgcg
cggcgcatcgtgctggcaaccaatgtggccgaaacctcgctgaccgtgcctggcatccgc
tacgtcatcgacgctggtctggcgcgggtgaaacgctacagctaccgtaacaaggtggaa
atgctgcaggtcgagcccatcagccaggccgcggcgcagcaacgcgcgggccgttgcggg
cgggtggccaacggcgtgtgcatccggctgtacgacgaagccgagttcgccgagcggccg
cggttcaccacgccggaaatccagcggtcttcgctggctgcggtcattctgcgcatgaag
gcgctggggctggattccatcgagcagtttcccttcattgagccgccgccgggcaaggcg
attgccgacggctaccagttgctcaccgaactgggcgcagtggacgaccgcaatgcgctt
acccctctgggccgcgaactcgcccgcctgccgctggacccgcgcatcggccgcatgatt
ctcgaagcccgcaaccgcgaggcactgaccgaagtgctgatcatcgccgcggcgctgtcg
gtgcaagacccgcgcgaacgccccgccgaggcgcagcaggcggccgatgaagcgcatcgc
aaattcagcgacgagcgctccgaatttctcggctggctcaagctctgggcgcattaccac
gcggccattgcccacaaaaagtcgcagcgaaaattgtggggcgaactgcgcggccagtat
ctgtcgccgctgcgcctgcgcgaatggcatgacgtgcacagccagttgcacaccctggta
gccgagcagggctggcggctcaacactgccgaggccacctttgagcagattcattgcgct
ttgctcagcggcctgctcggcaacgtgggctacaagggcgatgacgatgctcagtatctt
ggcgcgagaggcattcgctttgccatccatccgtcatcgccgctggggcgcaaggccggg
cggtggatcatggcggcggagctggtggaaaccacgcggctgtacgcccgcggcgtggcg
cgcatcgagccgctgtggctggagcgcgtaggcgcgcacctgctcaagaccagcctgctc
gatccgcattgggaaaagaagccggcgcaagtcaccgccttcgagcgcgcgacgctgtac
ggactggtcgtttacaaccagagacgggtggatttcggtcgcttcgaccctaagcaggcg
cgcgagatctttctgcgcgaggccctggtggcgggcgagtgggactgccgctggccgttt
ttccagcacaaccaggcgctgatcgccgacatcgaacgtctcgaacacaaggcgcggcgg
ctcgacgtgctggtggacgaagaactgatctacgccttctacgaccagcaagtgcccgac
gaagtgcacggcggcgccagtttcgaccgctggtatcgcgatgcggtgcgggccaagccg
aagctgctgtttctgcagcgcgacgagttgatgcgccacgaagccgccggcatcaccacc
gagacgtttcccaaccgcctcaaactcggcgcgctggaactgcagctcgactacaccttc
gaccccggcggcgcgcgcgacggcgtcacggtgcaggcgccgctggccgcgctcaaccag
attccggcgcagcggctgcaatggctggtgccggggctgctcaaggaaaagattctggcg
ctgctcaaaagcctgccgcaacgcccgcgttcgcgcctcgtgccgctgccgcaaaccgcc
gaggcgtttgccgcgcagctcacgacggccgagcgattcggccagggcgatctgctcgac
gccttgcgcgaacaggtgcgcgagcacaccgggctggcgctgcagcgcaccgacttcaag
ctcgaaaccctcgggccccatctgtttttcaacgtgcaggtgatcgacgcccacggacgg
cgcatcgacgtcgggcgagacatcgacaaactgcgcgccgatcacggccaagcctcgcgc
agtgcgtttgccgaactggccaaactgcgcaccgggctgtctccgcaaaaagacgccaag
gccccgtccgaagccccggcacctccccgcgcggcggccggcgcggcggccgcagcgccg
agcgaggcgcccatcgatgtgcccaccgatgcgctgcaaggactgaccgactggaccttc
gacgccctgccggaactgctggagctacgccggggcgcgcacaccctgatcggctttccc
gccctggtggacaagggcgctgcggtcgatgtggaggtgttcgacaccgccgaggaagcc
gcgcggttgcaccgtagcggcctgcgccgtctgttcgccctgcaactgcgcgatcagatc
aagcatgcagaaaaaaatctgcccggattccagcaggcggcgatgcagttcatgtcgctg
ggcacagctgaactgctgcgcgcgcagattgtggatgcggcgctcgatcgggcctttctc
gccgagccgctgcctgccgacaaatccgccttcgcccaacgcttgagcgaaggcaagccc
cgctttcaactgctggccgccgaaatggcgcggctggcggcgcagattctggacgaatac
gcgcaagtgcagaaaaaactcgccgcgttcaagaaccaacccgcgctgcacgccgacatc
cgcgcccagctgcaggccttgttgcccccgcgtttcatcgccgaaacgccgcccgcgcaa
atcgcgcactttccccgctatctgcaggccatcgggcggcggctggataaatttcgcgcc
gatccggcccgtgatgcgcaactcagcacccagctcgccccttggctcactcgctggcag
cgcgaggcggcgagctatcacggacacttgccgccacgcctgcaagagctgcgctggctg
ctcgaagaattgcgggtgtcgctgttcgcccaagaactgcgcacgcccatgccggtatcg
ctcaagcgtctggaaaaagtctgggcgcagtggcagggctga
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