Thiomonas intermedia: Tint_1690
Help
Entry
Tint_1690 CDS
T01227
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tin
Thiomonas intermedia
Pathway
tin03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Tint_1690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tin03400
]
Tint_1690
Enzymes [BR:
tin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tint_1690
DNA repair and recombination proteins [BR:
tin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Tint_1690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
AAA_30
RecG_dom3_C
ERCC3_RAD25_C
CTE_SPB4
Motif
Other DBs
NCBI-ProteinID:
ADG31060
UniProt:
D5X1R4
LinkDB
All DBs
Position
1811151..1814633
Genome browser
AA seq
1160 aa
AA seq
DB search
MSIVHALRAQVPALKPGQRVSWPLPAGSADALLLAELCAPRDDAAPWLVVTADAADAQRL
LGELQWFAPQLRIGLLPDWETLPYDSFSPHQDLISERLATLWAIHNQQIDVVIAPANTAI
QRLAPPEFLAAYTFDFRQGEALNEAALRAQLVLAGYNHVSQVMAPGEYAVRGGLIDLHPM
GSPVPYRVDLFGDTIDAIQAFDPDTQRSLYPVKEVRLLPGREFPLDDAAQKRFRARWREV
FEGDPSRSPLYKDMASGVAGPGIEYYLPLFFEQTATLPDYLGERTRVVLHGDISTAIQKF
WADTQERHRLLRHDPERPALAPDQLFLSEEAFFSRIKPLAQLALRPKADAPQTDKPTSAE
LPDISADRRATRPLARLAQWLEEGRPQHRRALLLAESAGRRETLRELLQESGLSAQPAES
WDEFVQGTTGFALAVGPLARGFALPADRLAVLTETELFALNPAQRRRRKQEQASNVDALI
HDLAELQPGDPVVHANHGIGRYQGLAELDLGDGPAEFLHLVYANDAVLYVPVSQLHLIGR
YSGAAQEDAPLHTLGSGQWDKARRKAAEQVRDAAAELLNIYARRAAHQGHAFRYSPQDYE
AFAASFGFEETPDQAAAIHAVVQDMISPKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQ
VAVLAPTTLLAEQHCETFRNRFADWPVRIAEMSRFRSTKEISAALDGLARGTVDIVIGTH
KLLSPTVKFDRLGLVIVDEEHRFGVRHKEALKAMRASVDLLTLTATPIPRTLGMALEGLR
DLSVIATAPQKRLAIKTFVRSESGAVMREAILREIKRGGQVYFLHNEVETIENRRRQLEE
LVPEARIEIAHGQMHERDLERVMRDFHAQRFNILLCTTIIETGIDVPSANTIVMARADKF
GLAQLHQLRGRVGRSHHQAYAYLLVPDVQSLTKQASQRLEAIQQMEELGSGFYLAMHDLE
IRGAGEVLGEQQSGNMQEIGFQLYNDMLSEAVKALRAGREPDLLNPLGVTTEINLHVPAL
LPGDYCGDVHARLSLYKRLASAATSAQLDSVAEEIVDRFGRLPPPAQALVDTHRLRLIAQ
SYGITKIDAAEEVAILHFRKDAPVDAARIIDLIQKNRHIKLTGNDRLRIERPTKDATQRA
QLIRDTLKQLGAPRAEVAIA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtctattgtccatgccctgcgcgcgcaagtgcccgcgctcaagcccggccagcgtgtg
agctggccgctacccgccggaagtgccgatgccctgctgctggccgagttgtgcgcgccg
cgcgatgacgccgcgccctggctcgtcgtcaccgcagacgcagccgatgcccagcgtctg
ctcggcgagttgcagtggttcgccccgcagttgcgcatcggtctgctgcccgactgggaa
accctgccttacgacagcttttcgccgcaccaggatttgatctccgagcggctggccacc
ctctgggccatccacaaccagcagatcgacgtggtcatcgccccggccaataccgccatc
cagcgtctggccccgcccgagttcctcgcggcctacaccttcgatttccgccagggcgag
gcgctcaacgaagccgcgctgcgcgcccagctcgtgctggccgggtacaaccacgtcagc
caggtgatggccccgggcgaatacgcggtgcgcggcggtctcatcgacctgcatcccatg
ggctcgcccgtgccctaccgcgtcgatctgttcggcgacaccatcgacgccatccaggcc
ttcgaccccgacacccagcgcagcctctacccggtcaaggaggtgcgactgctgccgggc
cgcgaatttccgctcgacgatgcggcgcagaagcgctttcgcgcccgctggcgcgaggtg
ttcgagggcgaccccagccgcagcccgctctacaaagacatggcaagcggcgtcgccggg
cccggcatcgagtactacctgcctctgttcttcgagcaaaccgccaccctgcccgactat
ctgggcgaacgtacccgcgtggtgctgcatggcgacatttccaccgccatccagaagttc
tgggccgatacgcaggagcgccaccgtctgttgcggcacgatccggagcgccctgccctc
gctcccgaccagctcttcctcagtgaagaagcgttcttcagccgcatcaagcccctcgcc
cagcttgcgctgcggcccaaggccgatgcgccgcagaccgacaaacccaccagcgccgag
ctacccgacatcagcgccgaccgccgcgccacccgcccactggcgcgcctggcgcaatgg
ctggaagagggccgcccgcaacaccggcgcgcgctgctgctggccgaatccgccggccgc
cgggaaaccctgcgcgagctgttgcaggagtccggcttgtcggcccagcctgcggaaagc
tgggacgaattcgtacagggcaccaccggcttcgccctggccgtcgggccgctggcgcgg
ggcttcgcgctgcccgccgaccgcttggccgtgctcaccgagaccgagctgttcgccctc
aacccggcccagcgcaggcgccgcaagcaagagcaggccagcaatgtcgatgccctgatc
cacgacctcgccgagctgcagcccggcgacccggtggtgcatgccaaccacggcatcggc
cgctatcagggcctggccgagctcgatctgggcgacggcccggccgaattcctgcatctg
gtctatgcgaacgatgcggtgctgtacgtgcctgtgtcgcaactgcatctcatcggccgc
tacagcggcgcggcgcaggaagacgcgccgctgcacaccctcggctcaggccagtgggac
aaggcccggcgcaaagccgccgaacaggtacgcgacgccgccgccgagctgctcaacatc
tacgcccgccgcgccgcgcatcagggccatgccttccgctactcgccgcaggactatgaa
gccttcgccgcgagtttcggtttcgaggaaacgcccgatcaagccgcggccatccatgcg
gtggtgcaggacatgatctcccccaagccgatggatcgcctggtctgcggcgacgtcggc
ttcggcaagaccgaagtcgcactgcgcgccgcgtttgtggcggtgatgggcggcaagcag
gtggccgtgctcgcccccaccaccctgctcgccgagcagcactgcgaaacctttcgcaat
cgcttcgccgactggccggtgcgcattgccgagatgtcgcgttttcgcagcaccaaggag
atcagcgccgcactcgacggcctggcgcgcggcacggtggacatcgtcatcggcacccat
aagctgctgtcgcccacggtcaagttcgaccggctcggcctggtcatcgtcgatgaggag
caccgcttcggcgtgcgccacaaagaggcgctcaaggccatgcgcgcctcggtcgatttg
ctcaccctcaccgccacgcccattccgcgcaccctgggcatggcgctcgaagggctgcgc
gatctgagcgttatcgccaccgcgccgcagaagcggctggcgatcaagaccttcgtgcgc
agcgaaagcggcgcggtgatgcgcgaggccatcctgcgcgaaattaagcgcggcggtcag
gtgtacttcctgcacaacgaagtcgagaccatcgaaaaccgccgtcgccagctcgaagaa
ctggtgcccgaagcgcgcatcgaaatcgcccacggccagatgcacgagcgggatctggag
cgggtgatgcgcgacttccacgcccagcgtttcaacattctgctgtgcaccaccattatc
gaaaccggcatcgatgtgcccagcgccaacaccatcgtcatggcgcgggccgataagttc
ggcctggcgcagctgcaccagctgcgcggccgcgtcgggcgttcgcatcatcaggcctac
gcctatctgctggtgcccgatgtgcagagcctgaccaagcaggccagccagcggctagaa
gccattcaacagatggaagaactgggctcgggcttctatctcgccatgcacgacctggag
attcgcggcgccggcgaagtgctgggcgagcagcaatcgggcaatatgcaggagatcggc
ttccagctctacaacgacatgctgagcgaggccgtgaaggcgctgcgcgcaggccgcgag
cccgacctgctcaacccgctgggcgtgaccaccgagatcaatcttcatgtgcccgccctg
ctgccgggcgactattgcggcgacgtgcatgcccggctttcgctctacaagcgtctggcc
agcgccgccaccagcgcccagctcgacagcgtggccgaggaaatcgtcgatcgcttcggc
cgcctgccgccgcccgcgcaggcgctggtggacacgcaccgtctgcggctgatcgcgcag
agctacggcatcaccaagatcgatgcggccgaagaagtggccattctgcacttccgcaag
gacgccccggtggacgccgcccgcatcatcgacctcatccagaagaaccgccacatcaag
ctcaccggcaacgaccgactgcgcatcgaacgcccgaccaaagatgccacgcagcgcgcc
cagctcatccgcgacaccctcaagcaactcggcgcgccgcgggccgaggtggcgattgcc
tga
DBGET
integrated database retrieval system
