Thiomonas intermedia: Tint_2247
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Entry
Tint_2247 CDS
T01227
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tin
Thiomonas intermedia
Pathway
tin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tint_2247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tin03019
]
Tint_2247
03009 Ribosome biogenesis [BR:
tin03009
]
Tint_2247
Enzymes [BR:
tin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tint_2247
Messenger RNA biogenesis [BR:
tin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Tint_2247
Ribosome biogenesis [BR:
tin03009
]
Prokaryotic type
rRNA helicases
Tint_2247
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
HEM4
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADG31597
UniProt:
D5X410
LinkDB
All DBs
Position
complement(2403078..2405078)
Genome browser
AA seq
666 aa
AA seq
DB search
MTSQQISPFAELGLPEPLLQALRDVGYETPSPIQAATIPPLLAGRDVLGQAQTGTGKTAA
FALPILAKIDCNARHTQALVLAPTRELAIQVAEAFARYATHLPGFNVLPIYGGQSYVPQL
ASLKRGAHVVVGTPGRIIDHLERGTLKLDQLAHMVLDEADEMLRMGFIDDVESILKKTPP
QRQVALFSATMPSAIRRIAQTYLRDPQEITIKAATTTATHIQQRYWMVSGLHKLDALTRI
LEVEPFEGMIIFARTKQATEELAEKLAARGFTAAALNGDVPQALRERMVQRLKDGQLDIL
VATDVAARGLDVERISHVVNYDIPTDTESYVHRIGRTGRAGRSGDAILFVTPRERHLLRA
IERATRQPITQMQLPSTEAVNDSRISRFMERITEAREQEGLEDYQRLVERYEQEFDIPAI
EIAAALARMVQGNKPLLMRPGSEPSYNADTREESRAPRREREPREGREPRTPRPARATRE
EGPAARAPRERAKPRDLDDFTQTLMQAREAADAAPHSAPREAASAEHPAHSERTARGPHT
ASDVRFETYRVEVGRDHGVEVRNLVGAIANEAGLENKHIGNIAIRGDHSFVELPEGMPKD
VFRTLQKTWVSGRQLQLTKAEPVRDTARERPATRAPARRFDSGDTSPAPKRRAAPMPGGK
SFKRKP
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgacttcacaacaaatctccccctttgccgaactcggcttgcccgaaccgttgctgcaa
gccctgcgcgatgtgggatatgaaaccccgtcgcccattcaggcggccaccattccgccg
ctgctggctgggcgcgatgtgctcggccaggcgcagaccggcacgggcaagacggcggcg
tttgcgctgcccatcctggccaagatcgattgcaatgcacgccacacccaggcgttggtg
ctggcgcctacgcgagagctggccattcaggtggccgaagcctttgcgcgctatgccacc
catctgccgggtttcaacgtgctgccgatctatggcgggcaaagctatgtgccgcagctc
gcttcgctcaagcgcggcgcgcatgtggtggtgggcacgccggggcgcatcatcgatcac
ctggagcgcggcacgctcaagcttgaccagctcgcgcacatggtgctcgacgaggccgat
gagatgctgcgcatgggcttcatcgacgacgtcgagtccatcctgaaaaagaccccgccg
cagcgtcaggtggcgctgttttcggccaccatgccctcggccatccgccgaattgcacaa
acctatttacgcgatccgcaggaaatcaccatcaaggcggccacgactaccgccacgcac
attcagcagcgctactggatggtcagcggtctgcacaagctcgacgcgctcacccgcatt
ctggaggtcgagccgttcgaaggcatgatcatcttcgcccgcaccaagcaggccaccgag
gagttggcggaaaagctggcagcgcgtggattcaccgcagcggcgctcaatggcgacgtg
ccgcaggcgctgcgcgagcgcatggtgcagcggctcaaggacgggcagctcgacatcctt
gtcgccactgacgtggcggcgcgcgggctggatgtggagcgaatcagccatgtggtgaac
tacgacattccgacggataccgaaagctacgtacaccgcatcggccgcaccggtcgtgcg
gggcgcagcggcgacgccattctgttcgttaccccgcgcgagcggcatttgctgcgcgcc
atcgagcgggccacgcgccagcccatcacgcagatgcagttgcccagcaccgaagcggtg
aatgacagccgcatcagccgcttcatggagcgcatcaccgaggcacgcgagcaggaaggg
ttggaagattaccagcgcctggtcgagcgctacgagcaagagttcgacattccggccatc
gagattgccgccgcgctggcacgtatggtgcaaggcaacaagccgctgctcatgcgcccg
ggcagtgaaccgtcctacaacgctgatacccgcgaggagagccgcgcgccacgccgcgag
cgcgaaccgcgtgagggccgcgaaccgcgcacgccccgccccgcgcgggccacacgcgag
gagggccctgcggcgcgtgcgccgcgtgagcgcgccaagccccgcgatctcgacgatttc
acccaaaccctgatgcaggcgcgtgaagcggccgatgcggcgccccattcggcgccgcgc
gaggccgcgtcggccgaacatccggcgcacagcgagcgcaccgcgcgaggcccgcatacc
gccagcgatgtgcgcttcgagacctaccgggtggaagtcggacgcgatcatggcgtggaa
gtgcgcaatctggtcggcgccatcgcaaacgaggccgggcttgaaaacaagcacatcggc
aatatcgccattcgcggcgaccacagctttgtcgagctgcccgaaggcatgcccaaagat
gtattccgcaccctgcaaaaaacctgggtgagtgggcgtcaactgcagctcaccaaagcc
gagccggtgcgcgataccgcccgggaacgtccggcgacccgagcgcccgcacgacgtttc
gattcgggcgatacgtcgcccgcgcccaagcgccgcgccgcgccgatgcccggtggcaag
tcgttcaagcgcaagccttga
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