Thiomonas intermedia: Tint_2406
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Entry
Tint_2406 CDS
T01227
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tin
Thiomonas intermedia
Pathway
tin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tint_2406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tin03019
]
Tint_2406
03009 Ribosome biogenesis [BR:
tin03009
]
Tint_2406
Enzymes [BR:
tin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Tint_2406
Messenger RNA biogenesis [BR:
tin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Tint_2406
Ribosome biogenesis [BR:
tin03009
]
Prokaryotic type
rRNA processing factors
Tint_2406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMEM106_N
Motif
Other DBs
NCBI-ProteinID:
ADG31755
UniProt:
D5X4U1
LinkDB
All DBs
Position
2565409..2568405
Genome browser
AA seq
998 aa
AA seq
DB search
MKRMLFNATQSEELRVAIVDGQKLLDIDIEQAGREQRKGNIYKAVVTRVEPSLEACFVDY
GEERHGFLPFKEISRQYFKEGVSPSQARIQDVITEGQQLLVQVEKEERGNKGAALTTIIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMDQLQHPEGMSLIARTAGIGRSAEELQ
WDLNYLLKLWSAVRDASETQKGAFLIYQESSLVIRAIRDYFTSDIGEILIDTEDVFEQAR
QFMLHVMPDTVERVKRYRDDLPLFSRFQIEQQIETAYSRTVNLPAGGAIVIDHTEALVAV
DVNSARSTRGNAIEDTALRTNLEAADEVARQMRLRDLGGLIVVDFIDMEEPRNQRAVEDR
LRDAMRQDRARVQVSKISKFGLLELSRQRLRPALSEGAYVTCPRCNGTGHIRDTESSALQ
ILRIIQEEAMKEGTAAVHVQVPVEVASFLLNEKRAEITKIELRQRLSVLLIPNKHLDTPN
YKLERLKHDDPRLDNLPTSYKMADEAEEDTAITRREKEQRPRQEALVRGITPEGPAPVMP
APAADKAPAPAPAPAVATPAAAPAAAATAGGGLFGWVKRLFSAEPQPSAAVQEPPVAAQP
ATPALTKADGQGGRGARTASGQNGNRRRGGRDRQREGQGENRQRGNPAAGAEAAEAAAGE
TTNPRNRPPRGQQGQAERSERPKRERNLEEAAARKERAQAAPEQTRAPAEESATDTAERS
SGSGRGGNRRPRREPVEAAPEAELIDAQALETQAEGDTEATPALTVGAGDEAQTERKSRN
RRGRGRRGGRREGAAADENGNLSAEANEAVTEADADETAGRSFGSLAAPLALGAVEAPAA
PALEDQTPLILRIDAPADLAVDAAQAAPRPVARPSEEAPLAAPDSPPAAAESSSLIVKAV
ENTTAATASAAEPAAAVAYVLPVDALQATAQAAGLQWVQSNADAIRRVQEELAAQPAPIH
VPRERKPAPKLDDGPLILVETARPLPTLQLPENNPPAH
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaacgccacgcagtcggaagaattgcgcgtggccatcgtcgat
ggacagaaacttctcgacatcgatatcgaacaggccgggcgcgagcagcgcaagggcaat
atctacaaggccgtcgtcacccgcgtcgagccctcgctcgaagcctgtttcgtcgattac
ggcgaagagcgccacggctttctgccgttcaaggaaatttcgcgccagtacttcaaggaa
ggcgtgtctccgtcgcaggcgcgcattcaggacgtgatcaccgaaggccagcaactgctg
gtgcaggtggaaaaagaagagcgcggcaacaagggcgcggcgctgaccaccatcatctcg
ctggccgggcgctatctggtactcatgcccaacaatccgcgcggcggcggggtgagccgt
cgcatcgaaggcgaagaccgccaggaactgcgcgagacgatggaccagctccagcatccc
gaaggcatgagcctgatcgcccgcaccgcgggcatcggccgcagcgctgaagaactgcag
tgggacttgaactacctgctcaagctctggagcgccgtgcgcgacgcttctgagacgcaa
aagggcgcgttcctgatctaccaggagtcgtcgctggtcatccgcgccatccgcgactac
ttcaccagtgacatcggcgaaattctgatcgacaccgaagacgtgttcgagcaggcacgg
cagttcatgttgcacgtcatgcccgacacggtcgagcgcgtcaaacgctaccgcgacgat
ctgccgctgttctcgcgctttcagatcgagcagcagatcgaaaccgcctattcgcgcacg
gtcaacctgccggccggcggcgccatcgtcatcgaccacaccgaagcgctggtggcggtg
gacgtcaactccgcacgctccacgcgcggcaacgccatcgaagacaccgctctgcgcacc
aacctcgaagccgccgacgaagtcgcccgccagatgcggctgcgcgaccttggcggcctg
atcgtggtcgacttcatcgatatggaagagccgcgcaaccagcgcgccgtcgaagaccgc
ctgcgcgacgccatgcgccaagaccgcgcccgcgtgcaggtgagcaagatttccaagttc
ggcctgctcgaactctcgcgccaacgcctgcgccccgccctgtcggaaggcgcttacgtg
acctgcccgcgctgcaatggcacggggcatatccgcgacaccgaatcgagcgccctgcaa
atcctgcgcatcatccaggaagaggccatgaaggaaggcacggccgcggtgcatgtgcaa
gtgccggtggaagtcgcctccttcctgctcaacgaaaagcgcgccgaaatcaccaaaatc
gaactgcgccagcgtctgtcggtgctgctgatccccaacaagcacctcgacacgcccaac
tacaagctcgaacgcctcaagcacgacgatccgcgcctggacaatctgcccaccagctac
aaaatggctgacgaggccgaagaagacaccgccatcacccgtcgcgaaaaagaacagcgc
ccgcgtcaggaagccctggtgcgcggcatcaccccggaaggcccggccccggtcatgccc
gccccggctgccgacaaggctcccgcccccgcaccggccccggcggttgcaacccccgcc
gccgcgcctgctgctgccgcaacggctggcggaggtttatttggctgggtcaagcgtctg
ttctccgccgaaccgcaaccctccgctgccgtgcaagagccgccggttgccgcgcagcct
gccaccccggccctgaccaaggcggatgggcaaggcggccgcggcgcacgcacggcttcc
ggccaaaacggcaaccgccgtcgcggcggccgtgaccgccagcgcgaaggccagggcgaa
aaccgtcagcgcggcaacccggccgctggtgccgaagccgccgaagccgcagcaggagaa
accaccaacccccgcaaccgtccgccccgtggtcaacagggccaggccgaacgcagcgag
cgccccaagcgcgagcgcaacctggaagaagccgcagcccgcaaggagcgcgcgcaggcc
gcacctgagcaaacccgcgcacccgccgaagaatcggccacggatacggccgaacgttca
tccggaagcgggcgtggcggcaatcgccgcccgcgtcgtgagcccgttgaagcggctccc
gaagccgaactgatcgatgctcaggcgcttgaaacccaagccgagggcgataccgaggcc
accccagctctgaccgtcggagcgggcgacgaagcgcagaccgagcgcaaatcgcgcaat
cgccgcggtcgtggccgccgtggtggacgccgcgaaggcgccgccgctgacgagaacggc
aatctgagcgccgaagcgaacgaagccgttaccgaagccgatgcggacgagacagcgggt
cgcagcttcggctctctggccgcgccgctggctttgggcgccgtcgaagcccccgccgcg
cccgcgctggaagatcagacgccgctgatcctcaggatcgacgccccggccgaccttgcc
gtggacgctgctcaggctgcccctcggcccgttgcccggccttccgaagaagcgccgctc
gccgcgcccgactccccgcccgccgcagcagagtcgtcctccctgatcgtcaaagcggtt
gaaaacaccacggcggcaaccgcatccgcagccgagcccgctgccgctgtcgcctatgtg
ctgccggtcgatgctctgcaggcaacggcgcaggccgccgggctgcaatgggtgcagtcc
aatgccgacgccatccgccgcgtgcaggaagaactggccgcgcaacccgcgcccattcat
gtgccgcgcgaacgcaagcccgcgcccaagctcgatgatggcccgctgattctggtggaa
accgctcgcccgctgcctacgctgcaactgccggaaaacaatccgccggcgcattga
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