Thiomonas intermedia: Tint_2438
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Entry
Tint_2438 CDS
T01227
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tin
Thiomonas intermedia
Pathway
tin03030
DNA replication
tin03430
Mismatch repair
tin03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Tint_2438
03430 Mismatch repair
Tint_2438
03440 Homologous recombination
Tint_2438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tin03032
]
Tint_2438
03400 DNA repair and recombination proteins [BR:
tin03400
]
Tint_2438
Enzymes [BR:
tin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Tint_2438
DNA replication proteins [BR:
tin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Tint_2438
DNA repair and recombination proteins [BR:
tin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Tint_2438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
ZapA
Motif
Other DBs
NCBI-ProteinID:
ADG31787
UniProt:
D5X4X3
LinkDB
All DBs
Position
complement(2596311..2599751)
Genome browser
AA seq
1146 aa
AA seq
DB search
MPYVHLRTHTEYSIVDGALRVDDMVPAAVRDGQGALAITDFNNLFATVRFYKAALDAGVK
PIIGCDVLLGSARHPGQFTRLLLLVQNRTGYLNLCDLLSRAWLDNQQRGRAVVQWEWLEG
GLAEGLIALSGAHEGAIGQALLQGDTATARDLTRQHAAVFEGRFYFELQRGGHAACEPHV
QAAVPLAAELGLPVVATHPVQFLKADDFDAHEARVCIAEGETLGNPRRQRKFTAQQYFKS
QAEMEALFADVPSALANTVAIAQRCNLVLDLGKPQLPLFPTPEGLTPAKFFRQQAQEGLE
QRLAVLYPQADEREAARPRYQQRLEYELGIIAKMGFEGYFLIVADFINWAKNNGCPVGPG
RGSGAGSLVAYSLRITDLDPLEYALLFERFLNPERVSMPDFDIDFCQENRDRVIDYVKEK
YGVEAVSQIATFGTMAARAAVRDVGRVLDLSYTFCDGIAKLIPAKPGQHITIADALKQEP
LLAQRYEEEEEVRQLLDLAQQLEGLPRNIGMHAGGVLIAPGKLTDFCPLYAQPGSTDAVS
QFDKDDVEAAGLVKFDFLGLATLTILELGAQLIRRNHPDRADFKLEDIPLDDPKSYKLMA
KGDTVAVFQLESRGMQGMLRDAKPDRFEDIIALVALYRPGPMDLIPTYCARKAGKEDVVY
PDPRMASVLEETYGIMVYQEQVMQVAQVIGGYSLGGADLLRRAMGKKKPEEMAQHRGIFA
EGAAKNGIKPEKANEIFDLMEKFAGYGFNKSHAAAYALLAVQTAWMKAHYPAEFLAANMS
IALDDTDKLKILVEDAQARGINVLPPDVNASQWRFDPVDSKTIRYALGAIKGNGQAAVEA
MIAARQERPFTSLFDFAERVDRTRLNKRVLEALAKAGAFDSLHPERAAVMAAVETAMDYA
TQREAARQQAGLFDLFAADAADGGHNPAHEPRLPEVEPWDLRTKLSFEKTAIGYYLSGHL
FDASAEEVRRFAPTALMDLVDSRDPVLIAGIAAGVRLVQSQRGRIAILALEDRSGAMEIV
IGESLLDTVRDRLRDDALLVLRGKAQTDRFNGGLRFNADSVWTLEEARARLGKSIRLKLN
GASSAEPLVGLARQHASEDGLPLLLDVERAGAQVRLSVPACRLPPTDPILSALAQLSKDG
RAEIDY
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgccctacgtccatctccgcacccacactgaatactccatcgtcgacggcgccttgcgc
gtggacgacatggtgcccgcggccgtgcgcgacgggcaaggggcgctggcgatcaccgat
ttcaacaacctgtttgccaccgtgcggttctacaaagccgcgctggacgccggggtcaag
ccgatcatcggctgtgacgtactgctgggcagcgcccgccatccggggcagttcacacga
ctgctgctgctggtgcagaaccgcaccgggtatctcaacctctgcgatctgctcagtcgg
gcctggctggacaaccagcagcgcggccgtgccgtggtgcagtgggaatggctggagggc
gggctggccgaaggcctgatcgccctctcgggcgcgcatgaaggtgccattggccaggcg
ctgctgcagggcgacacggccaccgcgcgcgatctgacgcggcagcacgcggccgtgttc
gaggggcgcttctacttcgagttgcagcgtggcggtcatgccgcgtgcgagccgcatgtg
caggcggcggtgcccttggcggccgaactgggtttgcccgtggtggcaacgcacccggtg
caattcctcaaggccgacgacttcgatgcccacgaagcgcgggtgtgcatcgccgagggc
gaaaccctgggcaacccgcgccgccagcgcaagttcactgcccagcaatatttcaagtcg
caggccgagatggaggcgctgtttgccgatgtgccctcggcgctggccaacaccgtggcg
attgcccagcgctgcaatctggtgctcgatctgggcaaaccgcaattgccgctgttcccc
acgcccgagggactgacccccgccaagttcttccgccagcaggcgcaggaagggctggag
cagcggctggcggtgctctatccgcaggccgacgagcgcgaagcggcccgcccgcgctat
cagcagcggctggagtacgagctgggcatcatcgccaagatgggcttcgagggctacttt
ctcatcgtggccgacttcatcaactgggccaagaacaacggctgcccggtgggaccgggg
cggggttcgggcgcgggttcgctggtggcgtacagcctgcgcatcaccgatctcgatccg
ctggagtacgcgctgctgttcgagcgctttctcaacccggagcgggtgtccatgcccgac
ttcgacatcgacttctgccaggagaaccgcgaccgcgtcatcgattatgtgaaggagaag
tacggcgtcgaagccgtgtcacagatcgcgaccttcggcaccatggccgcgcgcgccgcg
gtgcgcgacgtcgggcgggtgctcgatctgagctacaccttctgcgacggcatcgccaag
ctcattcccgccaagccgggccagcacatcacgattgccgatgcgctcaagcaggagccc
ctgctggcgcagcgctacgaggaggaagaggaggtcaggcaactactcgatctcgcccag
cagctcgaaggcttgccgcgcaacatcggcatgcacgcgggcggcgtgctcatcgcgccg
ggcaaactcaccgacttctgcccgctgtatgcgcagccgggcagcaccgacgccgtgtcg
caattcgacaaggacgatgtcgaagccgccgggctggtgaagttcgactttctcggcctg
gccacactgaccatcctggaactgggcgcgcaactcatccgccgcaaccaccccgaccgc
gccgacttcaaactcgaagacattccgctggacgaccccaagagctacaaactcatggcc
aagggcgacaccgtcgccgtgttccagctcgaatcgcgcggtatgcaaggcatgctgcgc
gacgccaagcccgaccgtttcgaggacatcatcgccctggtggcgctgtaccgccccggc
ccgatggacctcattcccacctactgcgcgcgcaaagcgggcaaggaagacgtggtctat
cccgacccgcgcatggcctcggtgctggaggaaacctacggcatcatggtctatcaggag
caggtgatgcaggtggcgcaggtcatcggtggctactcgctcggcggcgccgacctgctg
cgccgcgccatgggcaagaaaaagcccgaggagatggcgcagcaccgcggcatcttcgcc
gaaggcgcagccaaaaacggcatcaagccggagaaggccaacgaaatcttcgacctgatg
gagaagttcgcgggctacggcttcaacaaatcgcacgccgccgcctacgcgctgctggcc
gtacagacggcctggatgaaggcgcattaccccgccgaattcctcgcggccaacatgagc
atcgccctcgacgacaccgacaagctcaagattctggtggaagacgcgcaggcgcgcggc
atcaacgtgctgccgcccgatgtgaacgcttcgcagtggcgcttcgatccggtggacagc
aagaccatccgctacgccctgggggccatcaagggcaatggccaggctgcggtggaggcc
atgatcgccgcgcggcaagagcggcctttcacttcgctgttcgactttgccgaacgggtg
gatcgcacccgcctcaataagcgcgtgctcgaagctctggccaaggccggcgcgttcgac
agcctgcaccccgagcgtgccgcggtgatggccgcagtggaaaccgcgatggactacgcc
acgcagcgcgaggccgcaaggcagcaggccgggctgttcgacctgttcgccgccgacgcc
gccgatggcggccacaacccggcgcacgagccacggctgcccgaggtcgaaccctgggat
ctgcgcaccaagctctcctttgagaaaaccgccatcggctactacctcagcggccacctg
ttcgacgccagcgccgaggaagtgcggcgcttcgccccgaccgcgctgatggatctggtc
gattcgcgtgacccggtgctcatcgcgggcatcgcggccggggtgcgtctggtgcagtcg
cagcgcgggcgcatcgccatcctcgcgctcgaagatcgatcgggcgcgatggaaatcgtc
atcggtgaaagcctgctcgataccgtgcgcgaccgcctgcgcgacgacgccctgctggtg
ctgcgtggcaaggcgcagaccgaccgcttcaatggcgggctgcgtttcaacgccgactcg
gtgtggacgctcgaagaggcccgcgcccgcttgggaaaaagtatccgtctcaaactcaac
ggcgccagctcggccgagccgctggtggggctggcccgccagcacgccagcgaagatggc
ttgccgctgctgctcgacgtcgagcgcgccggggcgcaagtgcgcctgagtgtgccggcc
tgccgcctgccgcccaccgatccgatcctgagcgcgttggcccagctctcgaaagacggt
cgtgcggagatcgactactaa
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