Thiomonas intermedia: Tint_2660
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Entry
Tint_2660 CDS
T01227
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
tin
Thiomonas intermedia
Pathway
tin03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Tint_2660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tin03400
]
Tint_2660
Enzymes [BR:
tin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Tint_2660
DNA repair and recombination proteins [BR:
tin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Tint_2660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
Viral_helicase1
AAA_12
AAA_25
DUF294
AAA_11
HBS1_N
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
ADG32001
UniProt:
D5X684
LinkDB
All DBs
Position
2829256..2832864
Genome browser
AA seq
1202 aa
AA seq
DB search
MTAIPEPLDALTLPLQGSRLIEASAGTGKTWTIAALYLRLVLGHGDEASAFARPLSPEQI
LVMTFTRAATRELAERIRARLVEAAQCFQGTIAPKADDEFLLRLLDSYPPGSARQTAAWR
LAMAAQAMDDAAVFTIDAWCQRMLREHAFDSGHSFDEDLLADEGELTTQAVHDFWRQQVY
PLSGAALDGVLQVWPDVGALEGEVKSRLRAAQAGAPPVADKDDSLLDLWQRLGEPQQAQV
RTLKAQWAERVASMRQWLCALVQSEVNPLSKNKYGLKSVCGWFDALQAWLDDPAQQQPGL
DDKAWAKLTPDGLRAGCNQGKQVEPPAVFNEVEMLRAALADLADLVPELQTYAAAQVDAR
LRVLKAASGQFSFHDQLERLDAALAGPQGERLRARILEQYPVALIDEFQDTSALQFSVFD
RLYSITTAQTTHSAVLLIGDPKQSIYAFRGADIASYLRARQATQGRHSALQTNYRSTAEV
VHSVNQLFERREQSAGAGAFLYRDDEAPDADNPVPFIAVGARGRAEQLICSEGPVHALTC
AVHQALESKRDARERFAAHSAARIVSLLNDTQVGFRQADGGFARLRQSDIAVLVRDGDEA
RAMRRALQRRGVASVYLSDRDSVFASPEAADLLRWLRAVAEPRDGRLARAAFAAPTLGAT
IAELAALATDDDVFDNRLALLAELQAIWLRQGVLPMLRQTLHRLDLPARWLSEEDGERRL
TNVLHLAELLQTASGALDGEQALIRWLQEQMAGQSTEEQVVRLESEADLVRVVTIHKSKG
LEYPLVFLPFATAFKEAKDGADDRERLREDLRLLYVALTRARHALWVGIAALKVGKGSVC
MLHRSAIGYLLGGDTPCEGAAIPGLLRETFGDSPAVQIVDAAQEAELQRLQAAHPAQALI
EPPNYHAQFERNWSIGSFSALVRDLTPRSTQQPALQAALQDELWATEPSMEQPSPATLQP
SAARHRFPRGALVGKFVHEQLAWLGENGFALSAQQTQDNLLQRCARQGWDAPRSADLLEW
LSEVLATPLPPLGAALPEIDTLLAEMEFWLPVDRARAAEIDALCQQHILPGRARPELTER
TLHGMVMGFADLVFHHAGRYWVLDYKSNVLGTDDADYTQQVLEAAVLEHRYDVQCALYML
ALHRLLRARLRTAYDPQTQLGGAIDLFLRGVRGPRSGCVHIPPDGVLLDALDALFAKREE
LA
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgactgccatcccggaacccctcgatgccctgaccttgcccctgcagggcagccgcctg
atcgaagccagcgcgggcaccggcaagacctggaccatcgccgcgctctacctgcgcctg
gtgctgggccacggcgacgaagctagcgcgtttgcccgcccgctgagtcccgagcagatt
ctggtgatgaccttcacccgcgccgccacgcgcgaactggccgagcgcattcgggcgcgt
ctggtggaggcggcgcagtgcttccagggcaccattgcacccaaggcggacgatgaattt
ctgctgcgcctgctggacagctatccgccgggaagtgcgcggcagaccgccgcctggcgc
ctggcgatggcggcgcaggcgatggatgacgcggccgtgttcaccatcgacgcctggtgc
cagcgcatgctgcgcgaacacgccttcgacagcggtcattccttcgacgaagacctgctg
gccgacgaaggcgaactcaccacgcaggccgtgcacgacttctggcggcagcaggtctat
ccgctttctggcgcggcgctggacggtgtgctccaggtgtggccggacgtcggcgcgctg
gagggtgaagtgaaatcgcggctacgcgcagcccaggccggggcgccgccggtcgctgac
aaggacgactcgctgctcgacctctggcagcggctgggcgagccgcagcaggcgcaggtg
cgcacgctcaaggcgcaatgggccgagcgtgtcgcgagcatgcggcaatggctgtgcgcg
ctggtgcagtccgaggtcaacccgctgagcaagaacaaatatggtttgaaaagcgtttgc
ggctggtttgacgcgctgcaagcctggctggatgaccccgcgcagcagcagcccggtctc
gacgataaagcttgggccaagctcacgcccgacggcttgcgcgctggctgcaaccagggc
aagcaggtggagccgccagcggtgttcaacgaggtcgagatgctgcgcgcggcgctggcc
gatctggcggacctcgttcccgagctgcagacctatgcggccgctcaggtcgatgctcgg
ctgcgggtactcaaggcggccagcggccaattcagctttcacgaccagctcgaacgtctc
gatgcagcgctggccgggccgcagggcgagcggctgcgcgcgcgcattctggagcaatat
cccgttgcgctcatcgatgaatttcaggacacctcggcgctgcagttcagcgtgttcgat
cgcctctacagcatcactacggcgcagaccacgcacagcgccgtgctgctcatcggcgac
cccaagcagtcgatctacgcctttcgcggcgccgatatcgccagctatctgcgcgcgcgg
caggccacgcagggacggcactcggcgctgcagaccaactaccgctcgaccgcggaggtg
gtgcacagcgtcaaccaactgttcgagcggcgcgaacagtccgcgggcgcgggcgctttt
ctgtaccgggacgatgaggcgcctgatgcggacaaccccgtgcccttcatcgcggtcggt
gcgcgcgggcgggccgagcaattgatttgctccgaagggccggtgcacgcgctgacctgc
gccgtgcatcaggcgctggaatccaaacgcgatgcccgcgagcggtttgctgcgcattcg
gctgcgcgcatcgtcagtctgctcaacgatacgcaggtcggcttccgtcaggccgacggc
ggctttgcgcgtctgcgccagtctgacatcgccgtgctggtccgcgatggcgacgaggct
cgcgccatgcgccgcgcgcttcagcgccggggcgtggcttcggtttatctgtccgatcgc
gattcggtgtttgcctcgccggaggccgccgacctgctgcgctggctgcgtgccgtggct
gagccgcgcgacgggcgtctggcccgcgccgcattcgccgccccgacactgggggcaacg
atagccgagctggccgcgctggctaccgatgacgacgtgttcgacaaccggctggctttg
ctggccgagctgcaggctatctggctgcgtcagggggtattgcccatgctgcgccagacg
ctgcaccggctcgatctgcccgcccgctggttgagcgaggaagacggcgagcgccgcctg
accaatgtgctgcatctggccgaactgctgcagaccgccagcggcgcgctcgacggcgag
caggcgctgattcgctggctgcaggagcaaatggcgggccagtccaccgaagaacaggtg
gtgcggctggaaagcgaggccgatctggtgcgcgtggtcaccatccacaagtccaagggg
ctggaatatccgctggtgtttctgccgtttgccaccgcgttcaaagaggcgaaggacggc
gccgacgaccgcgagcgcctgcgcgaagacctgcggctgctctatgtggcgctgacccgc
gcgcgacatgcgctgtgggtcggcatcgccgcgctgaaagtcggcaaagggtcggtctgc
atgctgcatcgcagcgccatcggctatctgctgggaggcgatacgccgtgcgagggcgcc
gccattcccggcctgctgcgcgagacttttggcgacagtccggcggtgcagatcgtcgat
gcggcgcaggaggccgagcttcagcgcttgcaggctgcccaccccgcccaggccttgatc
gagccgcccaactatcacgcccagttcgagcgcaactggagcatcggcagcttctccgcg
ctggtgcgcgatctcaccccacgctcgacccagcaacccgctttgcaagcggccctgcaa
gacgaactgtgggcgaccgaaccgagcatggaacagccctcacctgcaactctccagccg
tctgccgcgcgccatcgctttccgcgtggcgcgctggtgggcaagttcgtgcatgaacaa
ctggcctggctgggcgagaacggtttcgccctttcagcccaacaaacgcaggacaacctg
ttgcaacgctgcgcccggcagggttgggatgcgccgcgttcggccgatttgctggagtgg
ttgagcgaagtgctggccacgcccttgccgccgctgggcgcggcgctgcccgagatcgac
acgctactggcggaaatggaattctggctgccggtcgatcgcgcgcgcgcggccgaaatc
gacgccctgtgccagcagcacatcctgccgggccgcgcccgccctgagttgaccgagcgc
accctgcacggcatggtgatgggattcgccgatctggtgttccaccacgcgggccgctac
tgggtgctcgactacaagagcaatgtcctcggcacggacgacgccgactatacgcagcag
gtgctggaggccgccgtgctcgaacaccgctatgacgtgcaatgcgcgctctacatgctg
gccttgcatcgcctgctgcgggcccggctgcgcacggcctacgacccgcagacgcagctt
ggcggcgcgattgatctgttcctgcgcggggttcgcgggccgcggtcgggctgcgtgcac
attccgcccgacggggtcttgctcgacgcgctcgacgccctctttgccaagcgcgaggag
ctcgcatga
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