Thiomonas intermedia: Tint_2745
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Entry
Tint_2745 CDS
T01227
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
tin
Thiomonas intermedia
Pathway
tin02020
Two-component system
tin02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tin00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Tint_2745
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Tint_2745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tin03021
]
Tint_2745
Transcription machinery [BR:
tin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Tint_2745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
Sigma70_r4
HTH_IclR
NNH6
HTH_23
Motif
Other DBs
NCBI-ProteinID:
ADG32086
UniProt:
D5X6T9
LinkDB
All DBs
Position
complement(2916736..2918256)
Genome browser
AA seq
506 aa
AA seq
DB search
MKPSLNLRLSQHLALTPQLQQSIRLLQLSTLELTQEIEGLLESNPFLEPEEEQEAPAAAP
TSESPPPLAPDPSQTSVEGHDAAAEPAAELQLDTQDWTASSGETDHGADTDADADSWVSS
GQSASGGGGDDDEFSALDIASEHLDLRDHLRGQLAGLALSATDRAAAEAIIDSLDDDGYL
PDTPLELAQALAPAADAEQLEDLADALTTAMRLIQSFDPAGVAAHDLPDCLCLQLQRQPS
CPVRELALQICRGGHLDLLAKRDWRKLERQLEADEAALRLAQQRIAQLDPHPGSAFRRDA
AQAVTPDVIARKTPQGWMAQLNPEVMPRLRVNQIYADAMRRARDSGGAMQGQLQEARWFV
KNVQQRFETIQRVSQTIVERQQRFFDFGPVAMRPMVLREIADELGLHESTISRVTTQKFM
LTPFGTVELKYFFGSGLSTEAGGNTSSTAVRELIRRLVAEEDSAKPLSDSELAERLTQQG
VQVARRTVAKYREALRIAPANLRKSG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgtcgctgaacctgcgcctgtcccagcatctcgcactcacgccgcagttgcag
cagtccatccggctgctgcaactctccaccctcgaactcacgcaggaaatcgagggcctg
ctcgaatccaatcccttcctcgaacctgaagaagagcaagaggcgcccgctgccgcgccg
acatccgagtcgccaccgcctttggcgcccgacccgtctcagacatcggtcgaagggcat
gacgcagccgccgagcccgccgctgagttgcaactcgacacgcaggactggacggccagc
agcggcgaaaccgatcacggtgcggataccgatgccgatgccgactcctgggtcagctct
ggccagtccgccagcgggggcgggggagacgacgacgaattcagcgcgctagatattgcc
tccgaacacctcgatctgcgcgaccacctgcgcggtcagttggctgggcttgcgctgagc
gccaccgaccgcgcggccgccgaagccatcatcgactcgctcgacgacgacggctatctg
cccgacaccccgctggaactggcgcaggccctcgcccccgcggcagacgccgagcagctc
gaagacctggccgatgcgctgaccacggccatgcgcctgattcagagcttcgacccggcc
ggtgtcgccgcccacgatttgcccgactgtctctgcctgcagcttcagcgccagccgtct
tgtcccgtgcgcgaacttgccctgcagatttgccgcggcggtcatctcgatctgctggcc
aagcgcgactggcgcaagctcgaacgccagctcgaagccgatgaagccgcgctgcgcctg
gcgcagcaacgcatcgcccagctcgacccccatccaggcagcgccttccgccgcgatgcc
gcgcaggccgtgacccccgatgtcatcgcccgcaagaccccgcaaggctggatggcgcag
ctcaaccccgaggtcatgccccggctacgcgtgaaccagatctatgccgacgccatgcgc
cgcgcccgcgacagcggcggcgccatgcagggacagcttcaggaggcgcgctggttcgtg
aaaaacgtgcagcagcgttttgagaccattcagcgcgtgtcgcagaccatcgtcgagcgc
cagcagcgttttttcgatttcggccccgtggccatgcggcccatggtgctgcgcgaaatt
gccgacgagctcggcctgcacgaatcgaccatctcgcgcgtgaccacgcagaaattcatg
cttacgcccttcggcactgtcgagctgaagtattttttcggctctggcctgagcaccgag
gccgggggcaacacctcatccaccgcggtacgcgaactcatccgccgcctggtggctgaa
gaagacagcgccaaacccctgtcggacagcgaactcgccgaacgcctcacgcagcaaggc
gtgcaggtggcgcggcgcaccgtggccaaataccgcgaagcgctgcgcatcgccccggcc
aatctgcgcaagagcggctga
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