Thiomonas intermedia: Tint_3105
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Entry
Tint_3105 CDS
T01227
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tin
Thiomonas intermedia
Pathway
tin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Tint_3105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tin03021
]
Tint_3105
03400 DNA repair and recombination proteins [BR:
tin03400
]
Tint_3105
Enzymes [BR:
tin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Tint_3105
Transcription machinery [BR:
tin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Tint_3105
DNA repair and recombination proteins [BR:
tin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Tint_3105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Aldolase
Motif
Other DBs
NCBI-ProteinID:
ADG32432
UniProt:
D5X004
LinkDB
All DBs
Position
complement(3288904..3293124)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKALLDLFKQFHQDEHFDAIRIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQSKVRRERMGHIDMASPVAHIWFLKSL
PSRLGIVLDMPLRDIERVLYFEAYVVTDPGMTPLKAGQVLSEDEYAAKRTEFGEEFVAFM
GAEGVHALLHNMDLDLEIEKLRGDMTGSDTKVKKNVKRLKVMQAFKDSGAKPEWMVMTVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELSAPEIIVRNEKRMLQEA
VDSLMDNGRRGKAMVGQNKRPLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFHKLETMGVATTIKAAKKEVESQTPIVWDILEDVIREHPVM
LNRAPTLHRLGIQAFEPMLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQVEARA
LMLASNNILFPANGEPSIVPSQDMVLGLYYATRERINGRGEGIVFADVSEVHRALDAKQV
EITSRVSVRLTEYEKDKATGSFTPKTAVVETTVGRAILSEILPKGLPFSVMNKALKKKEI
SRLINSSFRRCGLRETAIFADKLLQSGFSLATKAGISISIDDMLIPEEKYTVIARAEKEV
KEIEQQYSSGLVTQGERYNKVVDIWGRAGDEVGKALMNHLSNQTVKDRHGKDVRQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEHDCGTANGTNMRALVEGGEVIESLRDRVLG
RVAAVDVVSPETQDVIVPAGEMLDEDMLDLVEAAGIDEIKVRTALTCETRYGICAKCYGR
DLGRGTLVTNGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVVSSVEAKSAGTVRFT
ATMRYVTNTKGEQVVITRSGEVLITDDHGRERERHKVPYGATLFVKDGMVIKAGTLVANW
DPLTRPIITEYAGQIKFENVEEGVTVAKQVDEVTGLSTLVVIDPKRRGSAKVVRPQVKLL
NEQGQEVKIPGTDHAVTIGFTVGALIQVRDGQDVGPGEVLARIPMEGQKTRDITGGLPRV
AELFEARSPKDAGMLAETTGTVSFGKETKGKVRLVITDLDGNSNEFLIPKEKNVLVHEGQ
VVNKGELIVDGPAEPQDILRLLGVEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVEIKDPGDTDYIAGEQAERSQVLARNDVLLREGKMPATFNNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAFHQARKAKDAMDQADRAA
QAAAELQALEDSTLHSAESDNASDQS
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgctactcgacctgttcaagcagtttcatcaggatgagcatttcgacgccatt
cgtatcggcctggcgtcgccggaaaaaatccggtcctggtcgttcggtgaggtgaagaaa
cccgagaccatcaactaccgcacgttcaagcccgagcgcgatggcctgttctgcgccaag
atcttcggcccgatcaaagactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggcgtgatttgcgagaagtgcggcgtcgaagtcacccagagcaaggtgcgtcgcgag
cgcatgggccatatcgacatggccagcccagtggcgcacatctggttcctcaagagcctg
ccgtcccgtctgggcatcgtgctcgacatgccgctgcgcgacatcgaacgcgtgctgtac
ttcgaagcctatgtggtcaccgaccccggcatgacgccgctcaaggcgggtcaggtgctg
tccgaagatgaatacgccgccaagcgcaccgagttcggcgaagagttcgtcgcgttcatg
ggcgccgagggcgtgcacgccctgctgcataacatggatctcgatctggagatcgagaag
ctgcgcggcgacatgaccggctccgacaccaaggtcaagaagaacgtcaagcgcctcaag
gtgatgcaggcgttcaaggattcgggcgccaagcccgagtggatggtcatgaccgtgctg
ccggtgctgccgcccgatctgcgtccgctcgttcccctggacggcggccgatttgcgacc
tccgacctcaacgatctgtaccgccgcgtcatcaaccgcaacaaccgcctgcgccgtctg
ctggagctgtctgcgcctgaaatcatcgtgcgtaacgaaaagcgcatgctgcaggaagcg
gtcgattcgctgatggacaacggccgtcgcggcaaggcgatggtggggcagaacaagcgc
ccgctcaagtcgctggccgacatgatcaagggcaagagcggtcgcttccgtcagaacttg
ctgggcaagcgcgtcgactactcgggccgttcggtcatcaccgtgggcccgacgctcaag
ctgcatcagtgcggcctgcccaagctgatggcgctggaactgttcaagcccttcattttc
cacaagctcgaaaccatgggcgtggccaccaccatcaaggcggccaagaaggaagtcgag
tcgcagacccccatcgtctgggacattctcgaagacgtgatccgcgagcatccggtcatg
ctcaaccgtgcgcccacgctgcaccgcctgggcattcaggccttcgagcccatgctgatc
gaaggcaaggccatccagctgcacccgctggtctgcgccgcgttcaacgccgacttcgac
ggcgaccagatggccgtacacgtgccgctgtcgctggaagcgcaggtggaagcccgcgcg
ctgatgctggcgtcgaacaacatcctgttcccggccaacggcgagccgtccatcgtgccg
tcgcaggatatggtgctggggctgtactacgcgacccgcgagcgtatcaatggccgcggt
gagggtatcgtgttcgccgatgtgtccgaagtgcaccgcgcgctcgacgccaagcaggtg
gaaatcaccagtcgggttagcgtacgtctgaccgagtacgaaaaagacaaggccactggc
agcttcacccccaagaccgccgtggtggaaaccaccgtgggccgcgcgatcctgtcggaa
attctgcccaagggcctgccgttcagcgtgatgaacaaggcgctgaaaaagaaggaaatc
tcgcgcctgatcaactcgtcgttccgccgttgcggcctgcgcgaaaccgcgatcttcgcc
gacaagctgctgcagtcgggcttctcgctggcgaccaaggccggtatctcgatcagcatc
gacgacatgctgattccggaagagaagtacacggtcatcgctcgcgccgaaaaggaagtc
aaggaaatcgagcagcagtactcctccggtctggtgacgcagggcgagcgctacaacaag
gtggtggacatctggggccgtgcgggcgatgaagtcggcaaggcgctgatgaatcacctc
tccaaccagacggtcaaggatcgtcatggcaaggacgtgcgtcaagagtcgttcaattcc
atctacatgatggccgactcgggcgcccgtggttccgccgcgcagatccgtcagctcgct
ggcatgcgcggcctgatggccaagccagacggctccatcatcgagacccccatcacggcg
aacttccgtgaaggcctgaacgtgctgcagtacttcatctccacgcacggcgcgcgtaag
ggtctggccgacaccgcgctgaagaccgcgaactccggctacctcacccgccgtctggtg
gacgtgacgcaggatctggtggtcaccgagcacgattgcggcacggctaacggcaccaat
atgcgagcgctggtcgaaggcggcgaggtcatcgaatcgctgcgcgaccgcgtgctcgga
cgtgtggccgcagtcgacgtggtcagccccgagacccaggacgtcatcgttccggcgggc
gagatgctcgatgaagacatgctcgatttggtcgaagctgccggtatcgacgagatcaag
gtgcgcactgcgctgacctgcgaaactcgctacggcatctgcgccaagtgctatggccgt
gacctcggccgcggcacgctggtaaccaatggcgaagcggtcggcgtgatcgccgcgcag
tccatcggcgagcccggcacccagctgaccatgcggaccttccacatcggtggcgcggcg
tcgcgtgcagccgtcgtgtccagcgtggaagccaagagcgccggtaccgtgcgctttacc
gccaccatgcgctacgtcaccaacaccaagggcgagcaggtggtcatcacccgctcgggc
gaggtactgatcaccgacgaccacggccgcgagcgcgagcgtcacaaagtgccttacggc
gccacgctgttcgtcaaggacggcatggtgatcaaggccggcactctggtggccaactgg
gatccgctgacccgccccatcatcaccgagtacgcgggacagatcaagttcgagaacgtc
gaagaaggcgtgaccgtggccaagcaggtcgacgaagtcaccggcctgtccaccctcgtg
gttatcgacccgaaacgccgcggctctgccaaggtggtgcgtccgcaagtcaagctgctc
aacgagcagggccaagaagtcaagattccgggcaccgaccatgccgtgaccatcggcttc
accgtgggcgcgctgatccaggtgcgcgacggtcaagacgtggggccgggcgaagtgctg
gcgcgcatcccgatggaaggccagaagacccgcgacatcacggggggtctgccgcgcgtg
gccgagctgttcgaggcccgctcgcccaaggacgccggcatgctggccgaaaccactggc
actgtctccttcggcaaggaaaccaaaggcaaggtgcgcctggtcatcaccgacctggac
ggtaactccaacgagttcctgatcccgaaggaaaagaacgtgctggtgcacgaaggccag
gtcgtcaacaagggcgaactgatcgtcgacggccccgccgagccgcaggacatcctgcgc
ctgctaggggtcgaggccttggcgcgctacatcgttgacgaagtgcaggacgtctaccgt
ctgcagggcgtgaagatcaacgacaagcacatcgaggtcatcgttcgccagatgctgcgc
cgcgtcgaaatcaaagacccgggcgacaccgactacatcgcgggcgaacaggccgagcgt
tcccaggtgctggcgcgcaatgatgtgctcctgcgcgagggcaagatgcccgctaccttc
aacaacctgctgctgggcatcaccaaggccagcctgtccaccgacagcttcatctccgcc
gcgtccttccaggagaccacgcgcgtgctgaccgaagccgccatcatgggcaagcgcgac
gaactgcgtggcttgaaggaaaacgtgatcgtcggccgcctgattcccgcaggcactggc
ttggcgttccaccaggcgcgcaaggcgaaagatgcgatggaccaggctgaccgcgcagcc
caggccgccgccgaactgcaggcgctcgaagacagcaccctgcactcggcagaatccgac
aacgcatctgatcaatcctga
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integrated database retrieval system
