Thiomonas intermedia: Tint_3106
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Entry
Tint_3106 CDS
T01227
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tin
Thiomonas intermedia
Pathway
tin03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tin00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Tint_3106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tin03021
]
Tint_3106
03400 DNA repair and recombination proteins [BR:
tin03400
]
Tint_3106
Enzymes [BR:
tin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Tint_3106
Transcription machinery [BR:
tin03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Tint_3106
DNA repair and recombination proteins [BR:
tin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Tint_3106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DHC_N2
Motif
Other DBs
NCBI-ProteinID:
ADG32433
UniProt:
D5X005
LinkDB
All DBs
Position
complement(3293184..3297287)
Genome browser
AA seq
1367 aa
AA seq
DB search
MSYSFTEKKRIRKSFGSRQSVLDVPYLLATQINSYEAFLQKDLPLPQRKDEGLEAAFRAI
FPIVSHNQYVRMEYNGYTLARPVFDVRECQQRGLTFASALRAKVRLIVMDREAAKPTVKE
VKEQEVYMGEIPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARI
IPYRGSWLDFEFDAKDILYFRVDRRRKMPVTILLKALGLNPEQILAHFFAFDHMQLMDDG
ALLEFVPDHFKGEVARFDLIDQNGKVVVAKDKRINTRHLRELEQGGTQRLSVPEDFLLGK
VLARNLVSQDTGEIVARANEELTEALLKKIREAGIQQIQTLYINDLDQGAFISQTLRIDE
VADQLGAKVAIYRMMRPGEPPTEDAVEALFNRLFFDADAYDLSRVGRMKFNRRLGREEIE
GEMVLSHEDIMAVIKLLVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLSRIERAV
KERLGQAETENLMPHDFINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARLNEYGFIETPYRRVI
DRKVTDQIDYLSAIEEGKYVIAQANAGMDEHGMLNDELVSAREAGESIMVSPERVQYMDV
SPSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPVLRPEKPLVGTGVERVTAVDSGTV
VTALRGGVVDYVDSARIVVRVNDDETQAGEVGVDIYNLIKYQRSNQNTNIHQRPLVKRGD
KLAKGDVVADGASTDLGELALGQNMLVAFMPWNGYNYEDSILLSERVVAEDRFTSIHIEE
LNVPARDTKLGSEEITRDIPNLSEHQLARLDESGIIYVGAEVEAGDVLVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPSGMYGTVIDVQVFTREGIPRDKRAQQIIDDELKR
YRLDLNDQMRIVEADTFDRLGKLLTGKTANGGPNKLAKGATITADYLGETDRYNWFDIRP
ADEALAQQMEQLKDSLEKRRHAFDLMFEEKRRKLTQGDELPTGVLKMVKVYLAVKRRLQP
GDKMAGRHGNKGVVSKIVPVEDMPHMPDGTTVDIVLNPLGVPSRMNIGQILETHLGWASI
GIGKRVNDMLQSHAKAAELRKFLGTLYNFSGKQEALDQLSDAEVLELASNLKAGLPIASP
VFDGASEAEIGQMLDLAYPDDIAEKLQLTAAKKQVMLTDGRTGEVFERPVTVGIMHVLKL
HHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKS
DDTQGRTKMYESIVKGDHIIEAGMPESFNVLIKEIRSLGLDIELERN
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgtcctactcgttcactgagaaaaagcgcattcggaaaagttttggcagccgccaaagt
gttctggatgtcccctatctgctggctacgcagatcaactcctacgaggcctttttgcaa
aaagaccttcccttgccgcagcgcaaggacgaagggctggaagcggcgttccgcgccatt
ttccccatcgtgtcgcacaaccagtatgtgcgcatggaatacaacggctacaccctggca
cgcccggtgttcgacgtgcgcgaatgccagcagcgcggcctgacctttgcgtcggcgctg
cgggccaaggtgcgcctgatcgtgatggaccgcgaagcggccaaacccacggtcaaggag
gtgaaggagcaggaggtctatatgggcgagattccgctcatgaccgacaagggttccttc
atcatcaacggtaccgagcgggtgatcgtcagccagctgcaccgctcgcccggcgtgttt
ttcgagcacgacaagggcaagacccacagctcgggcaagctgctgttttccgcccgcatc
attccttaccgtggctcctggctcgacttcgaattcgacgccaaggacattctgtatttc
cgcgtcgaccgtcgccgcaagatgccggtcaccattctgctcaaggccctgggcctgaat
cccgagcagatcctggcgcacttctttgccttcgatcacatgcagttgatggacgatggc
gctttgctcgaattcgtgcccgaccatttcaagggcgaagtggcccgcttcgacctgatc
gaccagaatggcaaagtggttgtcgccaaggacaagcgcatcaacacccgccacctacgc
gagctggagcagggcggcacgcaacgcctgtcggtgccggaagacttcctgctgggcaaa
gtgctggcgcgcaacctggtgtcacaagacaccggcgagatcgtggcccgcgccaacgag
gagctcaccgaggcgctgctgaagaagatccgcgaagccggcattcagcagatccagacc
ctctacatcaacgatctcgaccagggcgcgttcatttcgcaaacccttcgcatcgacgaa
gtggccgaccagctcggcgccaaggtggcgatctaccgcatgatgcgccccggcgagccg
ccgaccgaagacgccgtcgaggccctgttcaaccgcctgttcttcgacgctgacgcctac
gacttgtcgcgcgtgggccgcatgaagttcaaccgccgcctcggtcgcgaagagatcgaa
ggcgagatggtgctgtcgcatgaagacatcatggcggtcatcaagctgctggtcgagttg
cgcaacggccgcggcgaagtcgatgacatcgaccacctcggcaaccgccgcgtgcgctgc
gtgggcgagctggccgagaaccagttccgtgccgggctgtcgcgcatcgagcgcgcggtg
aaggaacgtctgggccaggccgagaccgaaaacctgatgccgcacgacttcatcaactcc
aagcccatttcggcggcgatcaaggaattcttcggctcctcgcaactctcgcagttcatg
gaccagaccaacccgctgtcggaaatcacccacaagcgccgcgtctcggccctgggcccg
ggtggtttgacgcgcgagcgcgctggttttgaagtgcgcgacgtgcaccccacgcactac
ggccgcgtctgccccatcgaaacgccggaaggcccgaacatcggtctgatcaactcgctg
gcgctgttcgcccggttgaacgaatacggcttcatcgagacgccttatcgccgcgtgatc
gaccgtaaggtgactgaccagatcgactacctctcggccatcgaagaaggcaagtacgtc
atcgcccaggccaatgccggcatggacgagcacggcatgctcaacgacgagttggtgtct
gcccgcgaagctggcgagtccatcatggtctcgcccgagcgggtgcagtacatggacgtg
tcgcccagccagatcgtgtcggccgcggcctcgctcgtgcccttcctggagcacgacgac
gccaaccgcgcgctgatgggcgccaacatgcagcgtcaggccgtgcccgtgctgcgtcct
gaaaagccgctggtcggcaccggggtcgagcgcgtgaccgcggtcgactcggggaccgtg
gtcaccgccttgcgcggcggcgtggtggactatgtggacagcgcccgcatcgtggtgcgc
gtcaatgacgacgaaacccaggcgggcgaagtcggcgtggacatctacaaccttatcaag
taccagcgttccaaccagaacaccaacatccaccagcgcccgctggtcaagcgcggcgac
aaactcgccaagggcgatgtcgtggccgacggcgcttcgaccgacctcggcgaactggcg
ctgggccagaacatgctggtggccttcatgccgtggaacggctacaactacgaagactcg
atcctgctgtccgagcgcgtggtggccgaagatcgcttcacctccatccacatcgaagag
ctgaacgtcccggcgcgcgacaccaagctgggctccgaagagatcactcgcgacattccc
aacctgtccgagcaccaattggcgcgtctggacgagtcgggcatcatttacgtgggcgcg
gaagtggaagcgggcgacgtgctggtgggcaaggtcacccccaagggcgagacccaactc
acgccggaagagaagctgctgcgcgcgatcttcggcgaaaaggcgtccgacgtgaaggac
acctcgctgcgcgtgccctcgggcatgtacggcaccgtcatcgatgtgcaggtgttcacc
cgcgaaggcatcccgcgtgacaagcgcgcccagcagatcatcgacgacgagctcaagcgc
tatcgcctcgacctcaacgaccagatgcgcatcgtcgaggccgataccttcgaccgtctg
ggcaagctgctcactggcaagaccgccaacggcggcccgaacaagctggccaagggcgca
accatcaccgccgactacctgggcgagaccgaccgctacaactggttcgacatccgcccg
gcggatgaagctctggcgcagcagatggaacagctcaaggactcgctggaaaagcgccgc
cacgccttcgacctgatgttcgaagagaagcgccgcaagctcacccagggcgacgagctg
cccaccggcgtgctcaagatggtcaaggtttacctggccgtcaagcgccgcctgcagccg
ggcgacaagatggccggccgtcacggcaacaagggtgtggtgtccaagatcgttccggtc
gaagacatgccgcacatgcctgatggcaccacggtggacatcgtgctcaacccgctgggc
gtgccgtcgcgcatgaacatcgggcagattctcgaaacccacctgggctgggcctcgatc
ggcatcggcaagcgcgtcaacgacatgctgcagtcgcatgccaaggcggccgagttgcgc
aaattcctgggcacgctgtacaacttcagcggcaagcaggaagcgctcgatcagctcagc
gacgccgaagtgcttgaactcgccagcaacctcaaggccggtttgcccatcgccagcccg
gtgttcgacggcgccagcgaagccgaaatcggccagatgctcgacctggcctatcccgac
gacatcgccgagaagctgcagctcaccgcggcgaaaaagcaggtcatgctgaccgatggc
cgcactggcgaagtcttcgagcgcccggtgaccgtgggcatcatgcatgtgctcaagctg
catcacctggttgacgacaagatgcacgcccgctccaccggcccgtactcgctggtcacg
cagcagccgctgggcggcaaggcgcagttcggcggtcagcgtttcggcgagatggaagtc
tgggcgctcgaagcctacggcgcctcgtatgtgctgcaggaaatgctcaccgtcaagtcc
gacgatacgcagggccgcaccaagatgtacgagagcatcgtcaagggcgaccacatcatc
gaagccgggatgcccgagtcgttcaacgtgctgatcaaggaaatccgttccctgggtctg
gacatcgaactcgaacgcaattga
DBGET
integrated database retrieval system
