Thermophilibacter immobilis: INP52_05570
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Entry
INP52_05570 CDS
T07753
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
tio
Thermophilibacter immobilis
Brite
KEGG Orthology (KO) [BR:
tio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tio03009
]
INP52_05570 (rlmD)
Enzymes [BR:
tio01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
INP52_05570 (rlmD)
Ribosome biogenesis [BR:
tio03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
INP52_05570 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
MTS
Cons_hypoth95
Methyltransf_25
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_31
Methyltransf_15
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
QOY59914
UniProt:
A0A7S7RU59
LinkDB
All DBs
Position
1245739..1247109
Genome browser
AA seq
456 aa
AA seq
DB search
MTEPQTLELTAERMTYGADSVTHDADGRAVFLSGAVTGDRVRAVVDKLSERWAHARVTEV
LEASPDRVTPDCPYAGVCGGCPWAQLAYPAQAEAKRASVVDALARIGHLGLEHAEKLVAP
LVSPSEPWGYRNKIELGVGRTRGGKVILGMHGAGEGGLVRVKSCMLLDRTHAGAARSVAG
AVAFLSNSHGLDLERVGIRVSRRTKDVEVALWDRPGSFPRAQAAKILADAERPTSVVRVL
QKGPAKARRIAGVECLSGAGSWGELVGEERMRVSAPSFFQVNTRGAEKLVELVLEALDPQ
KDEEAMDLYCGAGTFTVPLARRAGFVSAVESYGPAVRDLRRNLEIAGTDNVDPIGGDAGR
EFPDAEADVIVVDPPRAGLAADVVERLSAQPARAIAYVSCDPATLARDLARFEATGTFSP
VRVTPVDLFPQTFHVETVTLLSKATRGAGTYQVRTL
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagccccagaccctcgagctcacggccgagcggatgacctacggtgcggacagc
gtcacgcacgacgcggacggcagggccgtctttttgtccggcgccgtgacgggcgaccgc
gtgcgcgctgtcgtcgacaagctcagcgagcgctgggcccacgcccgcgtcaccgaggtc
ctggaggcctcgcccgatcgcgtcacgcccgactgcccctacgccggcgtctgcggcggg
tgcccctgggcacagctcgcctaccccgcccaggccgaggccaagcgcgccagcgtcgtc
gacgctctcgcgcgcatcggccacctcggcctcgagcatgccgaaaagctcgtggcgccg
ctcgtctccccttctgagccctggggctaccgcaacaagattgagctcggcgtgggccgc
acgcgaggcggcaaggtcatcctgggcatgcacggcgcgggcgaggggggcctcgtgcgg
gtcaagagctgcatgctgctcgatcgcacccacgccggggcggcccgctccgtggcaggg
gccgtcgcctttctctccaacagccatggcctcgacctggagcgcgtgggcatccgcgtc
tcccggcgcaccaaggacgtcgaggtggccctctgggatcgccctggctccttcccccgc
gcgcaggccgccaagatcctcgccgacgccgagcgccccacctccgtcgtgcgcgtcctg
cagaagggccccgccaaggcccgccgcatcgcgggcgtcgagtgcctctcgggcgcgggc
tcatggggcgagctcgtgggcgaggagcgcatgcgcgtctcggccccgtcgttcttccag
gtgaacaccaggggcgccgagaagctcgtggagctcgtgctcgaggcgctcgacccccaa
aaggacgaggaggccatggacctctactgcggcgcggggaccttcaccgtgcccctcgca
cgcagggcgggcttcgtctcggcggtcgagtcatacgggcccgcggtgcgcgacctgcgc
cgcaacctggagatcgccggcacggacaacgtcgaccccatcggcggtgacgcgggtcgc
gagtttcccgacgcagaggccgacgtcatcgtggtggacccgccgcgggcgggcctcgcg
gccgacgtggtggagcgcctctcggcccagccggcgcgcgcgatcgcctacgtgtcgtgc
gacccggccaccctcgcccgcgacctcgcgcgcttcgaggccaccgggaccttctcgccc
gtccgcgtgacgcccgtggacctcttcccccagaccttccacgtggagacggtgaccttg
ctgtcaaaggcgacgcgaggcgcgggaacgtaccaggtcaggaccctctga
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