Tissierella sp. Yu-01: P3962_04220
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Entry
P3962_04220 CDS
T08969
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tis
Tissierella sp. Yu-01
Brite
KEGG Orthology (KO) [BR:
tis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tis03032
]
P3962_04220 (topA)
03400 DNA repair and recombination proteins [BR:
tis03400
]
P3962_04220 (topA)
Enzymes [BR:
tis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
P3962_04220 (topA)
DNA replication proteins [BR:
tis03032
]
Prokaryotic type
DNA Topoisomerases
P3962_04220 (topA)
DNA repair and recombination proteins [BR:
tis03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
P3962_04220 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
Toprim_4
Zn_ribbon_GRF
Zn_ribbon_Com
Motif
Other DBs
NCBI-ProteinID:
WFA09775
LinkDB
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Position
complement(809715..811796)
Genome browser
AA seq
693 aa
AA seq
DB search
MTKNLLIVESPAKSKTIGKILGRNYKVVASVGHIRDLPKSTLGIDIENNFEPRYINIRGK
GPLIKELKKEAKGAKKVFLATDPDREGEAISWHLAHILDLDTNENIRVEFNEITKDAIKS
AIKKPRPIDSNLVDAQQARRVLDRLVGYKISPLLWKKIRKGLSAGRVQSVTVKLICDREE
EIDNFIPKEYWTIKANLSKDKEIFEANFIGKYIDNKETKIEISSEEEVNEIIKSIDEDNF
KVLDVKRGQRKRKPYSPYTTSTLQQDASKKLGFTTKKTMSLAQQLYEGIDLKKDGTTGLI
TYMRTDSTRVSKEAIDIAKDYIINKFGKEYSNGGKNYGNKSKKETQDAHEGIRPTNVTLA
PDDIKDFLSKDQYKLYKLIWDRFVGSQMKEALYDTLNVNILSNDNLFRATGSKLVFPGFL
KVYITADEEIKEMKIPNLVEDDILKVEDIVPKQNFTQPPSRYTEASLIKVLEELGVGRPS
TYAPTIATILARNYVVLEKKQFYPTDLGKLVNEILIEYFDNIINEEFTAELEEKLDKIAE
GEISWKNVVNDFYGDFHTYLIKAEEEVDKIEIKDEVSDVICEKCGKNMVVKHGKFGKFLA
CPGYPECKNTKPILDEINVKCPKCDGMIVRKRSKKGRTFYGCTNYPECDFVSWDEPVEEK
CPNCSEYMIIKRNKKNDIIKCSNKECGYTKTIE
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaagaatttattgatagtggaatcacctgctaaatcaaaaacaatagggaaaata
ttaggacggaattataaagttgtagcttcagttggacatataagagatttgccaaaaagt
acactaggaatagatatagaaaataattttgagccaagatatataaatatacgtggtaaa
ggcccactaataaaggaattaaaaaaagaagcaaaaggagcaaaaaaagtatttcttgca
acggaccctgatagagaaggagaagccatttcgtggcatctagcacatattctggattta
gatactaatgagaatataagagttgaatttaatgaaataacaaaagatgctataaagtct
gccataaaaaagccaagaccaatagatagtaatttagttgatgctcaacaagccaggaga
gtattggacagattagttggttataaaataagtcctctattatggaaaaagataaggaag
ggtttaagtgcgggaagggtgcaatcagtaacagttaagttaatatgtgatcgagaagaa
gagattgacaactttattccgaaagaatactggacaattaaagctaatctatcaaaggat
aaagagatttttgaagccaatttcataggaaaatatattgataataaggaaactaaaata
gaaattagtagcgaagaagaagttaatgaaattataaaatccattgacgaggataatttt
aaagttttagatgttaaaagaggacagagaaaaagaaaaccatattcgccttatacgact
agtactttacaacaggatgcttcaaagaaattaggatttacaacaaaaaagactatgagt
ttagctcagcagttatatgaaggaattgatttgaaaaaagatggaactactggtttgata
acttatatgagaactgactccactagagtatctaaggaagcaatcgatattgctaaggat
tatattattaataaatttggaaaagagtattctaatggtggtaaaaattatggcaataaa
tcgaagaaagaaacacaagatgcccatgaaggtattcgaccaacaaatgttactcttgcg
ccagatgatataaaagattttttatcaaaagatcaatataagttatataaactaatatgg
gatagatttgtaggttctcaaatgaaagaagcattatatgatacattaaatgttaatata
ctaagtaacgataatctatttagggctacaggatctaaactagttttccctggctttcta
aaagtttatataactgcagatgaagagattaaggaaatgaaaataccgaatttagttgaa
gatgatatactaaaggttgaggatattgtaccaaagcagaattttacacaacctccatct
aggtatacagaagcctcgctaataaaagtattagaagaattaggagtaggtagacctagt
acttatgctcctacaatagctacaatattggcaagaaattatgttgtacttgaaaagaaa
caattttatcctacagatttaggtaagttagttaatgaaatattgattgaatattttgat
aatataataaacgaagagtttacggctgaattagaggaaaaacttgataaaatagcagaa
ggggaaatatcttggaagaatgtagttaatgatttttatggggattttcatacttatttg
attaaggctgaagaagaagtggataaaattgaaataaaggatgaagttagtgatgtaata
tgtgaaaaatgtggtaaaaatatggttgtcaaacatgggaaatttggcaaattcttagca
tgtcctggatatccagaatgtaaaaatactaaacctatactagatgaaataaatgtaaaa
tgtccaaagtgtgacggcatgattgttagaaaaagatcaaaaaaaggcagaactttttat
ggatgtacaaattatcctgaatgtgactttgtttcctgggatgaaccagtagaagaaaaa
tgtccaaattgtagtgaatatatgataattaaaagaaataagaaaaatgatataataaaa
tgcagcaataaggaatgtggttatacaaaaacaattgaataa
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