Tissierella sp. Yu-01: P3962_05025
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Entry
P3962_05025 CDS
T08969
Symbol
polC
Name
(GenBank) DNA polymerase III subunit alpha
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
tis
Tissierella sp. Yu-01
Pathway
tis03030
DNA replication
tis03430
Mismatch repair
tis03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P3962_05025 (polC)
03430 Mismatch repair
P3962_05025 (polC)
03440 Homologous recombination
P3962_05025 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tis03032
]
P3962_05025 (polC)
03400 DNA repair and recombination proteins [BR:
tis03400
]
P3962_05025 (polC)
Enzymes [BR:
tis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
P3962_05025 (polC)
DNA replication proteins [BR:
tis03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
P3962_05025 (polC)
DNA repair and recombination proteins [BR:
tis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
P3962_05025 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
DNA_pol3_a_NII
tRNA_anti-codon
Rv2179c-like
DNA_pol3_a_NI
RNase_H_2
DEDDh_C
Rubredoxin
HHH_3
Zn_ribbon_8
YhfH
Motif
Other DBs
NCBI-ProteinID:
WFA09914
LinkDB
All DBs
Position
complement(968316..972653)
Genome browser
AA seq
1445 aa
AA seq
DB search
MKRIKDIFTDYETGDILSEAKVEGVILNKDTKNLEMNISSDKYIEVKKLADLIEFMKKRF
KLEDSIISVNYTSDTEKRPIEEELDNLIIILSDKYPVLRAALNNCRYEISENTITFNFKT
IVSNYFEMNNYDKECHDVIKKLYGTSYQIKFIDKVNDEELLKLKDDIQAKENQIIQEEEK
ASYNQYISNNIIEYKQDIQKESNGKKGDPSLILGRSSKNKEPIIKITDISPNEGMVVIAG
EISNLESKELRSGKVLVSFDLYDGSSSITCKSFVKGEDANEVFSRLSKAKGIRISGNAGY
SNFTGEVEIIANTIIETNGMRRIERKDKADVKRVELHMHTQMSQMDAMTSATDLIKRAMN
WGMKSVAITDHGVVQAFPEAHKLLGRDNSDMKVIYGVEAYLAPDKKPSVTSHKGQSIDTT
YCVLDLETTGFSPVTEKITEIGIMKVKEGKVIDEFSCFVNPEKPIPQRVVEVTNITDDMV
KDAETIDKIFPRMLDFIKDTVLVAHNASFDINFLKHNAKVLGYDFDFTYLDTLTLAQELF
PEFKTYKLGRIAKNLNIKVEVAHRALDDVDTTVKVFNIMIDKLKERGAKTLADIDVYGSD
EEAKKEEYKKLRTYHAIILAKDYVGLKNLYKLVSYSHLDYFYKKPRILKSMFKKYSEGLI
IGSACSEGELYQAVLLGKSDEEIEAIAEDYDYLEIQPIGNNDYLVRTEQVPNRDYLKEIN
RKIVALGEKLNKPVVATGDVHFLDPEDEIYRRILEAGQGYKDADNQAPLYLKTTDEMLDE
FSYLGREKAYEVVVTNTNMISEMCENISPISSEKATPHIEGCEQTIRDITYDRAHELYGD
TLPEIVEQRLEKELDSIIKNGFSVMYIIAQKLVWKSNEDGYLVGSRGSVGSSVVAYMTGI
TEVNALPAHYRCPSCKHSDFTDYGYNIGFDLPDKDCPVCGEKLEKDGIDIPFETFLGFNG
DKEPDIDLNFSGEYQAKAHKYTEVIFGKGTTFKAGTIGTIADKTAFGYVRKYYEERNIPI
NKAEIVRISKGCTGIKRTTGQHPGGIIVVPKGREIYEFCPVQHPADDPNSDIITTHFDYH
SIDQNLLKLDILGHDDPTMIRMLQDLTGVDPKTIQMDDKETMSIFSSTVALGVTPEQINS
KVGTFGVPEFGTRFVRGMLLDTMPKKFMDLICISGLSHGTDVWLGNAKELIDAEIVTSIS
EAVCTRDDIMVYLIKMGLPPNSAFKIMELVRKGKALKDPKWPEYEELMREHNVPEWYIDS
CRKIKYMFPKAHAAAYVMMAFRIAWFKVHIPLAYYAAYFSIRAKAFDAEFMIHGKEKVKE
KLKEIDALGNQAAPKDKDMYDDLEIVLEMYERGFKFLPIDLYKSHASKFQIEDDMLRPPF
NSISGMGNVAAEGIYKAANEEPFSSIEDLRKRAKVGNAAVELLKKFNCLDGLPESNQLSL
FDVFG
NT seq
4338 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaattaaagatatttttactgattatgaaacaggggatattttaagtgaagcc
aaagtagaaggcgttatattaaataaggatacaaaaaaccttgaaatgaatattagctca
gataagtatatagaggttaagaaacttgctgatttaattgaattcatgaagaaaagattt
aaactagaagattcaattatatcggttaattatactagtgacactgaaaaaagaccaata
gaagaggaattagataatttaataattatattatctgataaatatcctgtccttagagct
gctttaaataattgtagatatgagatatcggaaaatactataacttttaactttaaaact
atagtttcaaattattttgaaatgaataattatgataaagaatgtcatgacgtaattaaa
aaactttatggtacatcctatcaaattaaattcattgataaagtgaatgatgaagagtta
ttaaagttgaaagatgatatacaagctaaagaaaatcaaataatacaagaggaagagaaa
gcaagttataatcaatatatttctaataatattattgagtataaacaggatatacagaaa
gaaagtaatggtaaaaaaggagatccatcacttatcctaggaagaagttcaaaaaataaa
gaaccaattattaagataactgatatatcaccaaatgaaggaatggtagtaattgcaggt
gaaatctccaatttagaatctaaggagctaagaagtggaaaggtactggtatcctttgac
ttatacgatggttcaagctcaataacatgtaaatcctttgtaaaaggagaagacgctaat
gaggttttttctagattgagtaaagcaaaaggaattagaatttctggcaatgcgggatat
agtaactttaccggtgaagtcgagatcattgccaataccataatcgaaacaaatggaatg
agaaggattgagagaaaagataaggctgatgtaaagagagtagagcttcacatgcatact
caaatgagccaaatggatgccatgacaagtgctaccgatcttataaagagagccatgaac
tggggtatgaagtccgtcgccattacagaccatggagtggtacaagcttttccagaagca
cataagttattaggtagagataattcagatatgaaagtaatatatggagtagaagcctat
ttagctccagataagaaaccttctgtgacaagtcataagggacaaagtattgatactacc
tattgtgttcttgatttagaaactacaggtttttcaccagtaacagaaaagataacagaa
ataggaattatgaaagttaaagaaggaaaagttatagatgaatttagttgttttgttaat
cctgaaaaaccaatacctcagcgtgtagttgaagtaaccaatataacagatgatatggta
aaggatgcagagactatagacaagatttttccaagaatgcttgactttattaaagatact
gtgttagttgcccataatgccagctttgatatcaactttttaaagcataatgctaaagtc
ttaggctatgattttgattttacttatttggatacattgactttagcacaagagttattt
cctgaatttaagacatataaattagggagaattgctaagaatttgaatattaaagtagag
gttgctcacagggcattagacgatgttgatacaactgttaaggtattcaatataatgatt
gacaaactaaaggaaagaggagcaaaaacacttgcagatatagatgtttatggttctgac
gaggaagctaagaaagaagaatataaaaagttaagaacttatcatgcaattatattagcg
aaggattatgtaggattaaaaaatttatataaattagtatcctattcacatttagactac
ttttataaaaagccacgtattttaaagagcatgtttaaaaagtattcagagggtttgatt
attggaagtgcctgtagtgaaggagagctttaccaggcagtgttgttaggaaaatctgat
gaagaaatagaggcaatagccgaagattatgattatttagaaatacagcctattggcaat
aatgattatttagtcagaacagagcaagtgcctaatagagattatctaaaggagatcaat
agaaagattgtagccttaggtgagaaattgaataaaccagtagtcgctactggagatgtt
cacttcttagaccctgaggatgaaatatacagacgtatacttgaggcgggacaaggttat
aaagatgcagataatcaagctccactatatttaaagactactgatgagatgcttgatgaa
ttttcctatttaggtagagagaaggcatatgaagtagtagttacaaatacaaatatgata
tctgagatgtgtgaaaatattagtccaatttcgtcagaaaaagcgacaccacatatagag
ggttgcgagcagactattagggatattacctatgatagggcacatgaattatatggagat
acgcttcccgaaatagtggagcaaaggcttgagaaggagcttgattctataataaaaaat
ggcttctcggttatgtatattatcgcacaaaaactagtgtggaaatcaaatgaggatggt
tatttagtaggttctagaggttctgttggttcttctgtagttgcatatatgactggtatt
acagaggttaatgccttgccagcacactacaggtgtccaagttgtaaacactctgacttt
acagattatggttataatatagggtttgacttaccagataaagattgtccagtatgtgga
gaaaaattagaaaaggatggaatagatataccatttgaaactttcttaggttttaatgga
gataaggagcctgatatagacttaaacttttcaggtgaatatcaagcaaaggcgcataaa
tatactgaagttatctttggtaaaggcactacatttaaggcaggtactatcggtacgatt
gctgataagacagcctttggttatgttagaaagtattatgaggaaagaaatattcctata
aataaagcagaaatcgttcgaatatcaaagggatgtactggtattaaaagaactacagga
cagcatcctggaggtataattgtagttccaaagggtagagagatatatgaattctgtcca
gtacaacatccagctgatgatcctaattcagatattattacaacacattttgattatcat
tcaattgatcaaaatctattgaagctggatatacttggacatgatgaccctactatgatt
agaatgttacaggatttaactggagttgaccctaagactatacaaatggacgataaagag
acaatgtccatattttcatccactgttgccctaggagttactcctgaacaaataaattct
aaggtaggaaccttcggagttcctgaatttggtacaagatttgttaggggtatgctttta
gacacaatgcctaagaaatttatggatttaatatgtatatcaggtctatctcatggtaca
gacgtgtggctgggcaatgctaaggaattaattgatgcagaaatagttaccagcatcagt
gaggccgtatgtactagagatgatattatggtatatcttatcaaaatgggactaccacct
aatagtgcatttaagataatggaattagtacgtaaaggtaaggcattaaaggatccaaaa
tggcctgaatatgaagaattaatgagagagcataatgttcctgaatggtatatagattcc
tgtagaaagataaaatacatgttcccaaaagcccatgctgctgcttatgtaatgatggct
tttagaattgcttggtttaaggttcatatacctttagcctattatgcagcatatttttca
ataagggcaaaggcttttgatgctgaatttatgatacatgggaaagaaaaggtaaaggaa
aaattaaaggaaatagatgctcttggtaatcaggcagctcctaaagacaaggatatgtat
gatgatttagagatagtattagagatgtatgaaagaggatttaagttccttccaattgac
ttatataaatctcatgcaagtaagtttcaaattgaagatgatatgttaagaccacctttt
aacagcatatccggaatgggtaatgtagcagccgaaggcatttacaaagctgctaatgaa
gaaccttttagctctatagaggatttaagaaaacgtgctaaagttggtaatgcagcagtt
gaattgctaaagaaatttaattgtttagatggtctaccagagagtaatcagttaagtcta
tttgacgtatttggttaa
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integrated database retrieval system
