Tissierella sp. Yu-01: P3962_06500
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Entry
P3962_06500 CDS
T08969
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tis
Tissierella sp. Yu-01
Pathway
tis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P3962_06500 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tis03019
]
P3962_06500 (rnr)
03016 Transfer RNA biogenesis [BR:
tis03016
]
P3962_06500 (rnr)
Enzymes [BR:
tis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
P3962_06500 (rnr)
Messenger RNA biogenesis [BR:
tis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P3962_06500 (rnr)
Transfer RNA biogenesis [BR:
tis03016
]
Prokaryotic type
tRNA degradation factors
P3962_06500 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_HELZ2
OB_Dis3
CSD
S1CSD-TOTE-2
RNase_II_C_S1
WHD_MCM
Rho_RNA_bind
Malectin_like
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
WFA10194
LinkDB
All DBs
Position
complement(1287771..1289888)
Genome browser
AA seq
705 aa
AA seq
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MSIREIIIEFMEEKTYKPMLKEELAVHFNINKGDFKEFYKILESLEKEGVLIRNNKDKYG
LIKSDYLVVGVLQGNERGYGFVIPQDKEKDDIFIPAENMNSAMHGDTVVANILKRQESDR
RMEGEIVRILERANITVIGTFEDNGQFGFLIPDDHRMAYDIFIPKAHTGGAKDKQKVIVE
ITKWPEFRRNPEGRVVDILGYLTDKGIDILSIIKQYKLPEEFPPKVQEMANNVAEILTDK
DLEGRTDLRDLTTFTIDGADAKDYDDAISIEKLENENYKLGVHIADVSHYVRERSALDKE
AYQRGNSVYLIDRVIPMLPRELSNGICSLNPNVDRLTLSVFMEIDKKGTVVDHQIMESVI
SSKKRCIYDDVSDFLENDDERAKEKLKEILPELKLMEELMQILHEKRDRRGSIDFDFPET
FIELDDNGKPIDVRKAERRIANRMIEEFMLVCNETVAEDFYWAEIPFLYRIHEEPNPEKL
QVFNKFISNFGYTLKGQEIHPKELQLLTKEIKGKKEESVISTLLLRSLKKAVYSATSDIH
FGLAAKYYSHFTSPIRRYPDLVIHRIIKDYLKGKLSGEKQDRLEKKLPDIAEHTSMTERR
AEEAEREVDDLKKAQYMSEKIGEQYEGIISSVTNFGLFVQLENTIEGLVHFNIMDDDFYR
FDEENHYIIGERTKRIYRLGDTVKIEVIGADVAKRNIDFRLVNED
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgagtattagagagataataatagaatttatggaggaaaaaacctataagccgatgctt
aaagaggaattagctgttcactttaatataaataaaggagacttcaaagaattctataag
atattggaaagtttggagaaggaaggagtattaattagaaacaataaggataagtatgga
ttgattaaatcagattatctagttgtaggtgtactccaggggaacgaaagaggatatgga
tttgttattcctcaagataaagaaaaagatgatatatttattcctgcagaaaatatgaac
agtgcaatgcatggagatacggttgtagctaatattttaaaaagacaagaatcggatagg
agaatggagggtgaaattgtaagaatccttgaacgtgctaatatcacagtaataggtaca
tttgaggataatggacaatttggcttcttaattccagatgaccatagaatggcttatgat
atatttatacctaaagctcatacaggtggagcaaaggataagcaaaaggttatagtagaa
attacaaaatggcctgagtttaggagaaatccagagggtagggttgttgatattctagga
tacctaacagataagggtatagatatactatctataattaaacaatataaacttcctgaa
gaattcccacctaaggtgcaagagatggctaataacgtagcagaaattttaactgataag
gacttagagggaagaaccgacttaagggatttaacaacatttacaatagatggtgctgat
gctaaagactatgacgatgcaatttcaatagaaaagttagaaaacgaaaactataaatta
ggtgttcacatagcagatgtatcccattatgtaagagaaagatcagccttggataaagaa
gcataccaaagaggaaattcggtatatttgatagatagagtaataccaatgcttccaagg
gaattatcaaatggaatttgctccttaaatccaaatgtggacagactaactttaagtgtg
tttatggaaatagataaaaaaggaactgtagtagatcatcagataatggaaagtgttata
agtagtaaaaagagatgtatatatgatgatgtatcagacttcttagaaaatgatgatgaa
agggctaaggagaaactaaaagaaatactaccagagcttaaattgatggaagaattaatg
caaatattacatgaaaagagagataggagaggaagtattgactttgatttccctgaaaca
tttattgaattagatgacaatggtaaaccaatcgacgtcagaaaagcagaaagaagaatt
gctaatcgcatgatagaagagttcatgttagtatgtaatgaaactgtagcagaggatttt
tactgggctgaaataccattcctatatagaatacatgaggaaccaaatcccgaaaagtta
caggtctttaataaattcatatctaattttggatacactttaaaaggtcaagaaatacat
cctaaggagttacaactattgaccaaagaaattaagggcaagaaggaagaatcagttatt
tctactttattgttaaggtcactgaaaaaagcagtatacagtgcaacatcagatatacac
tttggtcttgcagcaaaatattatagccattttacttcgccaattagaagatatcctgac
ttagtcatacacagaattattaaagattatctaaagggtaaattatctggtgaaaagcaa
gacagactagagaagaaattaccagatatagctgaacacacttctatgactgaaagaaga
gctgaggaagccgaaagagaagttgatgatcttaagaaagctcaatatatgtcagaaaaa
attggtgaacagtatgaaggtataatatcttcagtaactaattttggtttgtttgtacaa
cttgaaaatacaatagaaggattagttcactttaatattatggatgacgatttttataga
tttgacgaagaaaaccactatattattggtgaaagaactaaaaggatatatcgacttggt
gacactgtaaagatagaagtaattggagcagatgtagcgaaaaggaatatagatttccga
ttagtaaatgaagactag
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