Thermoanaerobacter italicus: Thit_0712
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Entry
Thit_0712 CDS
T01178
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tit
Thermoanaerobacter italicus
Brite
KEGG Orthology (KO) [BR:
tit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tit03016
]
Thit_0712
Enzymes [BR:
tit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Thit_0712
Transfer RNA biogenesis [BR:
tit03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Thit_0712
Prokaryotic type
tRNA splicing ligases
Thit_0712
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADD02002
UniProt:
D3T7S0
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All DBs
Position
775414..776922
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AA seq
502 aa
AA seq
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MLDDMFLFVNFRKIRDRKGVNFHGVEVIQGYTVVKDGINKWCIPKFGKMRVDAVIYVNDT
LKELLHEDQSLRQITNAATLPGVVKPVIGMPDIHEGFGLPIGGVMAIEEKGVISAGAVGY
DINCGVRLLRTNLEAEYFNKELLYKLIERIEYYVPTGIGKKGRHKGITRLIFDDVVHNGV
EAVIKAGFGKKSDLNFIEEGGKLSGADISAVSKEAQERGEEQLGTLGGGNHFIEIQQVDS
ILDEKLAERFGLFKGQIAVMIHTGSRGFGHQIATDYTKILWEAAKKYGVDVPEKGLAAAP
IDSKEGKAYYKAMAAAVNFAFSNRQIIMFDVIKAFEDVLKKSSESMGFQLVYDVAHNIAK
WEEHGGKKLLVHRKGATRALPAGHPQNPSFYKESGHPALIPGSMGTGSYVVVGTEKAAET
FYSVNHGAGRRLSRNKAKKITKEEFEKAMGDVIYNVRSFKDIVDESPLAYKDVEEVISVL
SERGITTPVARLIPLAVVKGAD
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgttagatgatatgtttttattcgtgaattttaggaaaataagagataggaagggggta
aacttccatggggtagaggttatacagggttatacggtagtaaaagacgggattaataaa
tggtgcattcccaagtttggcaaaatgcgtgttgatgcagtaatttatgtgaatgatacc
ttaaaagagcttttgcatgaagaccagtctttacgacagattaccaacgctgccaccctt
cctggagtggtgaaaccagttatagggatgccggatattcacgaagggtttggtcttcct
ataggaggagttatggcgatagaggagaaaggggttatttcagcgggagccgtaggatat
gatattaattgtggtgtaaggcttttgagaactaatcttgaagcagagtattttaataaa
gagcttttgtataagcttatagaacggattgagtattatgttcctacaggcatagggaaa
aagggacggcataaaggtattacgaggttaatttttgatgatgtagttcataatggggta
gaggctgtcattaaggcaggttttggaaaaaaatcggatttaaactttattgaagagggt
ggaaagctttcaggggcagacatttctgctgtgtcaaaagaagcgcaagaaagaggagaa
gagcagcttggcactttaggtgggggcaatcattttatagagattcaacaggttgactct
attttggatgagaaattggcagagcgttttggacttttcaaagggcaaattgctgtaatg
attcacacaggaagccgcgggtttggacatcagattgcaacagattatactaagattcta
tgggaggcagcaaagaaatacggtgttgatgttccagaaaaagggcttgcggcagctcct
attgattcaaaggagggtaaggcgtattataaagccatggcagcagcagtgaattttgct
ttttcaaacagacaaataattatgtttgatgttataaaagcatttgaagatgtattaaaa
aaatcttcagaatctatgggctttcaactggtatatgatgttgctcataatattgctaaa
tgggaagaacatggagggaaaaagcttcttgttcacagaaagggagcgacgagagcttta
ccagcggggcatccgcaaaatccttctttttacaaagaatcaggacatcctgctcttatt
cccggcagtatgggtacaggttcttacgttgtggttggcacagagaaagcggcagaaact
ttttattcggtaaatcacggggcaggacgaaggctttctcgcaacaaagcgaaaaaaatc
actaaagaggaatttgaaaaggctatgggagatgttatatacaatgtcaggtcttttaag
gatatagttgatgagtcgccgctggcctataaagatgtggaagaagttatttctgtcctt
tcagaaagaggaattacaacacctgttgcacgccttatacctcttgcggttgtaaaaggt
gcagattaa
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