Thermoanaerobacter italicus: Thit_2233
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Entry
Thit_2233 CDS
T01178
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tit
Thermoanaerobacter italicus
Pathway
tit03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Thit_2233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tit03400
]
Thit_2233
Enzymes [BR:
tit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Thit_2233
DNA repair and recombination proteins [BR:
tit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Thit_2233
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
TRCF
Helicase_C
DEAD
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
AAA_22
ApoLp-III
Imm30
RecG_dom3_C
nSTAND_NTPase5
AAA_SelU
Motif
Other DBs
NCBI-ProteinID:
ADD03444
UniProt:
D3T5S1
LinkDB
All DBs
Position
complement(2276636..2280127)
Genome browser
AA seq
1163 aa
AA seq
DB search
MFTRQIEELKEIKTIEEFLKQGKGPLLAYGLTDSQKAHVAHYIMSKFNKKVLVIAPDDIE
ARKIYEDLYSFSFGNASLFPKREALFYKIDAASQEMVSQRLRVIKKLTRETPHAVVTSID
AAIGKLIPMNLFEKYQMFFKIGDIVNLQEVIKNFVAMGYERVQIVEGKGQFSVRGGIIDV
FSPIEEYPYRIELFDDEIDSIRTFDVITQRSLENIDKINIFPATEFIAEEKHIKKGISAV
SKSLNSYLLKIKKSKSGIAEKLQQKFEEIMEEITEAKRVENIHELIDYFYDEVYSIVDYV
GEEAVIILDESSRIKQRVNNLQMEFNENFKALLEKGEVLPEQSRLFFDYEEILKKAKNSF
LLIVNTLAKPDNELQPRKIVNFISRSMHPFHGKMDILIDDLKYYKNAGYKVLLLSGNQER
AKILKDTLESFNIDAAVIEDSEYDIQKGQVVIYPASVSKGFEYVDAKFAVITEGEIFGQT
KKNKKTVKIKNADRIKNFTELEVGSYVVHVNYGIGKYEGIEKIKVDGIIRDYLKIIYAGG
DTLFVPVEQLDLVQKYVGPTDNPPKLNKLGGSEWLKAKRKAKKAVEDLAKDLIQLYAKRQ
IAKGHAFSPDTPWQREFEEQFPYEETEDQLRCIKEIKEDMEKDKPMDRLLCGDVGYGKTE
VALRAAFKAVADGKQVAFLCPTTILAYQHYTNFMERFKEFPVKIEMLSRFRTPKEQAQII
KGLAEGTIDIIVGTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSA
TPIPRTLHMSLIGIRDMSVLENPPEDRFPVETYVVEFNEELIKDAILREIGRGGQVYFVY
NRVNGIEKMASLVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLD
IPNVNTIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEF
TEFGSGFKIAMRDLEIRGAGNLLGAEQHGHIGAIGYDLYLKLLEEAIRNLKGEAPKEEIT
TTIDIKVNAYIDSSYIEDENLRLEMYKKIASIESREDMVEISEELVDRFGDYSKPVEALL
EIAYLKVIASKANITEITEKGNTVILKFKDIESVKMEVIEKIIKEYGGNLIFSNQLQPYL
TYRFNKKETLQKELIELVEKMSA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgtttactcgccaaatagaagaattaaaagaaataaaaacaatagaagaatttttaaaa
caagggaaaggcccccttttagcttatgggcttacagattctcaaaaagctcatgttgcc
cattatataatgagcaagtttaataaaaaagtgttagttattgctcctgatgatatagaa
gcgagaaaaatatacgaagatttgtattcttttagttttggcaatgcctctttatttccc
aagagagaagctttgttttataaaatagatgctgccagtcaagagatggtatctcagagg
ttaagagtaattaaaaaattgacaagggaaactccccatgcggtagttacttctatagat
gcagcaataggcaaactcatacccatgaatttatttgaaaagtatcagatgttttttaag
ataggtgatattgtaaatttacaagaggttataaaaaattttgtggcaatgggatatgaa
agagttcaaatagtggaaggaaaagggcaatttagtgtgagagggggaataattgacgtt
ttttctcctattgaagaatatccttatagaattgaactttttgacgatgaaatagattcc
ataaggacttttgatgtgatcacccaaaggtctttagaaaatattgataaaataaatatt
ttccctgctacagagtttatcgcggaagaaaagcatattaaaaaagggatttcagcggtt
tccaagtctttaaattcctatttattaaaaataaaaaaatcaaaaagcggaattgcagaa
aaattacagcaaaaatttgaggaaattatggaggagattacggaagctaaaagggtggaa
aatattcatgaacttatagattatttttatgatgaggtttattctattgtggattatgtg
ggagaagaggcagttattattttagacgagagcagccgtattaagcaaagggtaaataat
cttcaaatggaatttaatgaaaatttcaaggctttattagaaaagggagaagttttgcca
gagcaaagcaggctttttttcgattatgaggaaatattaaaaaaggcaaaaaatagtttt
ttactcatagtaaatactttagcaaagcctgacaatgagctacagccgcgaaaaattgtt
aattttatatcaaggtctatgcatccttttcacggcaaaatggatattttgatagatgat
ttaaagtattataaaaatgcaggatataaagttttgcttttaagtgggaatcaggaaaga
gcaaaaattttaaaggatacacttgaaagttttaatattgatgcggcagtgattgaagac
agtgaatacgatatacaaaaagggcaagtagtgatatatcctgcctctgtcagcaaggga
tttgaatatgtggatgcaaaatttgctgtcataactgagggagaaatttttggacagact
aaaaagaacaaaaaaactgtgaaaattaaaaacgccgacaggataaagaactttactgaa
ttagaagtagggtcatatgtcgtacatgtaaattatggtataggaaagtatgaaggcata
gaaaagataaaagtagatgggattataagggattatttaaaaataatttatgccggtgga
gataccctttttgtaccggtggaacaattagatcttgtgcaaaaatatgtaggacctaca
gacaatcctcctaaattaaataaattggggggcagtgaatggcttaaagcaaaaagaaaa
gccaaaaaagcagtagaagaccttgctaaggatttgatacaactttatgccaaaagacag
atagctaaaggacatgctttttctcctgatactccatggcaaagggagtttgaagagcaa
tttccctatgaagagacagaagaccagttaaggtgtataaaagagattaaagaggacatg
gaaaaagataagccaatggatagacttctctgtggagatgtggggtatggtaagacagaa
gttgctttaagggctgcttttaaagcagtagctgatggaaagcaagttgcttttttgtgc
cctacaactattttggcttatcagcattatactaatttcatggaaagatttaaggaattt
cctgtgaagatagagatgcttagtcgttttaggactcccaaagaacaagcacaaataatt
aaaggcttggcggaagggactatcgatattattgttggtactcataggcttttacaaaat
gacgtgaaatttaaggatttaggacttttaattatagatgaagagcagaggtttggagtt
gttcataaagaaaaaataaaaaaactcaaagaaaatatagacgttttgacattatcagca
actcctattcctagaactttacacatgtctttaattggcataagggatatgagcgtatta
gagaatcctcctgaagacagatttccagtagaaacttatgtggtagaattcaatgaggag
ttaataaaagatgctattttgagggaaattggaagaggaggacaagtctattttgtttac
aatagagtaaatggcatagaaaagatggcttctttggtaaaagatttggttcccggttgc
agggtagctgtggctcatgggcaaatggaggaaagtcaattagaaaaagtgatgattgac
tttttaaatggggaatacgatgttttagtaagcactacaataattgagacagggcttgat
ataccaaatgtgaataccattatagtttatgatgcagataagttagggctttctcaattg
tatcaattaagaggaagagtgggtaggtcaaatagactggcttatgcctattttacctat
agaaaggataaagttttaagtgaagtggctgaaaaaaggttagaggcgataaaagagttt
actgaatttggttctggatttaaaattgccatgagggatttggagataagaggtgcaggt
aatctccttggagcagaacaacatggccatattggcgcaattggttatgacttgtattta
aagcttttagaggaggctatacggaatttgaagggagaagctcctaaagaggagattact
accacaatagatataaaagttaatgcttatattgactcttcctatattgaagacgagaat
ttaagattagagatgtacaaaaaaattgcctctatagaatctagagaagatatggtggaa
atttcagaagagcttgtagataggtttggagattattcaaagcctgtagaggcactgttg
gaaattgcttatttaaaggttattgcttctaaagccaatattactgaaataacggaaaaa
ggaaacactgttattttaaaatttaaagacatagaatcggttaaaatggaggttatagag
aaaataataaaagaatatggaggaaatttaatattttcaaatcaactacagccatatctc
acttataggttcaataaaaaagagactctgcaaaaagagcttattgaattggtggaaaaa
atgtctgcgtaa
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