Tissierella sp. MB52-C2: RBU61_02545
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Entry
RBU61_02545 CDS
T09678
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tiz
Tissierella sp. MB52-C2
Pathway
tiz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tiz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RBU61_02545 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tiz03021
]
RBU61_02545 (rpoC)
03400 DNA repair and recombination proteins [BR:
tiz03400
]
RBU61_02545 (rpoC)
Enzymes [BR:
tiz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RBU61_02545 (rpoC)
Transcription machinery [BR:
tiz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RBU61_02545 (rpoC)
DNA repair and recombination proteins [BR:
tiz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RBU61_02545 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
WMM25562
LinkDB
All DBs
Position
523036..526563
Genome browser
AA seq
1175 aa
AA seq
DB search
MFEFNTFDSIKIGLASPEKIRQWSKGEVKKPETINYRTLKPEKEGLFCEKIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTKSKVRRERLGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRSLEKILYFASYVVIEGGDTSLYEKQLLTETEYREAYDKYGNKFKAMMGAEAVKALLA
NIDLDREGKELRQQLKDASGQKKIRITRRLEVVEAFRQSGNKPEWMILDVVPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKFYQCGIPKK
MALELFKPFVMKKLVEEGHAHNIKSAKRMVERVKPQVWDVLDSVIKDHPVLLNRAPTLHR
LGIQAFEPVLVEGKAIKLHPLVCTAYNADFDGDQMAVHVPLSTEAQAEARLLMLSTNNIL
APKDGKPITTPTQDMVLGAYYLSVESSGEIGEGMIFKDYSEMLHAYYNGSVGLHARVKVR
MRLNEEDRGQLVESTVGRFILNEHLPQDLGFVDRTKDKYSLEVDMLVNKKALGSIIEKCF
AKHGNAVTATVLDHIKETGFHYSTLGAISISMNDIIIPNSKGELLQKAQGEVDKFERSYR
RGLISDEERYEKVIEIWNKATDDLTSILMDGLDPMNNIYIMSLSGARGSVNQIRQLAGMR
GLMASASGRTIEIPIKANFREGLDVLEFFISTHGSRKGLADTALRTADSGYLTRRLVDVS
QDVIVREVDCGTDEYLLVKPFTDGKEVIEELHDRIEGRYAFENILHPETGEILVKENEMI
SNSQAEEIQNLGITEVKVRSVLGCQAKYGVCGHCYGRNLATGDEVNIGEAVGIIAAQSIG
EPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAVITENAGVVSIEESKRKKE
VIITSSNGESMNYNIVYGSRLKVKPGDMVEAGDELTDGSVNPHDILKIKGIQGVQNYLVK
EVQRVYRLQGVDINDKHIEVIVRQMLSRVKVEEAGDTNMLPGSLVSAHDFEENNIKAIRE
GLEPAEGKKTLLGITKASLATDSFLSAASFQETTRVLTQAAIEGKEDFLLGLKENVIIGK
LIPAGTGMKRYRNIEISGDENIQILEELNVDSENN
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaattcaatacatttgattcaattaaaattgggctagcttcaccagagaaaatt
agacaatggtctaaaggagaagtaaaaaaacctgagacaataaactatagaacattaaag
cctgaaaaggaagggctattttgtgaaaaaatatttgggccgcagaaagactgggagtgt
cattgtggtaaatataaaagagtaagatacaaaggagtagtttgtgataggtgtggagta
gaagttacaaagtctaaggttcgtagagagagactaggacatattgaattggccgctcca
gtatctcatatatggtattttaaaggtatacctagtaggatgggactattattagatatg
tctccaagatcgctggaaaaaatattatactttgcatcatatgttgttatagaaggtgga
gatacttctctatatgaaaaacaacttttaacagaaactgagtatagagaagcctatgac
aaatatggaaataaatttaaagcgatgatgggagcagaagctgtaaaggctttattagca
aatattgatttagatagagaaggcaaggaattaagacaacagttaaaagatgcatcaggc
caaaagaaaataagaataactagaaggcttgaagtagtagaagcttttagacaatcaggt
aataaaccagaatggatgattttagatgttgtaccagtaataccgccagatcttagacca
atggtacagctagatggtggtagatttgctacatctgatttaaatgatttatatagaaga
gttattaatagaaataatagattaaaaagactcctagatttaggagcaccagatattatt
gttagaaacgaaaagagaatgcttcaagaggcagtagatgcccttatagataatggacgt
agaggaagaccagtaactggtccaggtaatagacctttaaaatctctatcagatatgctt
aagggtaaacaaggtagatttagacaaaacttactaggtaaaagggtagattattcagga
cgttctgtaatagtagttggaccagacctaaagttttatcaatgtggtataccaaagaaa
atggctcttgaactatttaagccttttgtaatgaaaaaattagtagaagaaggtcatgct
cataacattaaatcagcaaagagaatggttgaaagagtaaaaccacaggtatgggatgtg
ttggattcagtaataaaagaccatcctgtacttctaaatagagctccgacccttcacaga
cttggaattcaggcatttgaacctgttttagttgaaggtaaagccataaagctacatcca
ttagtatgtacagcatataatgctgacttcgatggtgaccaaatggcagttcacgtacct
ttatctacagaagcacaggcagaagcaaggcttctaatgctatctacaaacaatattctt
gcaccaaaggatggtaaacctataactaccccaacccaagatatggttttaggagcttat
tacctatcagttgaatcttcgggagaaataggagagggtatgatatttaaagactatagt
gaaatgcttcatgcttattacaatggctctgtaggtctacatgcaagagtaaaggttaga
atgaggcttaatgaagaggataggggacaactagttgagtctacagtaggtagatttata
ctaaatgaacatcttcctcaagatttaggatttgttgacagaactaaagataaatattcc
ctagaagttgatatgttagtaaataaaaaagcattaggaagtattatagaaaaatgcttt
gcaaaacatggaaatgcagttactgcaactgtactagatcatattaaagaaacaggattc
cattattcaactttaggggctatatctatttcaatgaatgatataattattcctaattca
aaaggagaattattacaaaaagctcaaggtgaagttgataaatttgaaagatcctatcgt
aggggtttaatatcagatgaggaaagatatgaaaaggttattgaaatttggaacaaggcc
actgacgacttaactagtatactaatggacggtctagatccaatgaataatatctatata
atgtctctatcaggagcgagaggtagtgtaaaccaaattagacagctggcaggtatgagg
ggacttatggcatctgcatctggtagaactatagaaattcctataaaggctaactttagg
gaaggactagatgtacttgaattctttatctctactcacggttccagaaagggactagcg
gatactgctcttagaactgctgactctggatacttaactagaagattagttgacgtaagt
caagacgttatagtaagagaagttgattgtggcactgatgagtatttattagttaaacct
tttactgatggaaaagaagtaattgaagagctacatgatagaattgaaggcagatatgct
tttgaaaatatattacatcctgaaacgggagaaattttagttaaagaaaatgaaatgatt
tcaaatagccaagctgaagaaattcaaaatcttggaataacagaagttaaggtacgttcc
gttttaggctgtcaagctaaatatggagtttgtggtcactgttatggtagaaatttagct
actggagatgaagtaaatataggagaagcagttggaataattgctgcacagtcaattggt
gagccaggtactcagcttacaatgcgtactttccatacaggtggagttgctggagcagat
attactcaaggtttacctagggttgaggagctatttgaggcaagaaagcctaagggtctt
gctgtaattactgaaaatgccggagtcgttagcatagaagaaagtaagagaaagaaagaa
gttataattacttcctcaaatggagaatcaatgaactataatatagtttatggctctaga
ctgaaggtaaagccaggagatatggttgaagccggtgatgaactaacagatggttctgta
aacccacatgatattcttaaaatcaaaggaatacaaggggtacaaaactatttagtgaaa
gaagtacaaagagtttatagactacaaggtgtagatattaatgataaacatattgaggta
atagttagacaaatgttatctagggtaaaggttgaagaggcaggagatactaatatgttg
ccaggttctttagttagtgctcatgattttgaagaaaataatataaaagctattcgagaa
ggattagaaccagcagaaggcaagaagactttactaggtattacaaaggcctcattggct
acagactcattcttatcagcagcttcattccaagagactacaagagttctaacacaagct
gcaatagaaggaaaagaagatttccttttagggctaaaagagaatgttatcatcggaaaa
ttaattccagcaggaacaggaatgaagagatatagaaatatagaaatttctggagatgaa
aatattcaaattttagaagaattaaatgttgacagtgaaaataactga
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