Tissierella sp. MB52-C2: RBU61_19380
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Entry
RBU61_19380 CDS
T09678
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tiz
Tissierella sp. MB52-C2
Pathway
tiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBU61_19380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tiz03019
]
RBU61_19380
03009 Ribosome biogenesis [BR:
tiz03009
]
RBU61_19380
Enzymes [BR:
tiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RBU61_19380
Messenger RNA biogenesis [BR:
tiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RBU61_19380
Ribosome biogenesis [BR:
tiz03009
]
Prokaryotic type
rRNA helicases
RBU61_19380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
KaiA
Pantoate_ligase
UvrA_inter
Helicase_RecD
DUF6076
Motif
Other DBs
NCBI-ProteinID:
WMM25064
UniProt:
A0AA51R3B0
LinkDB
All DBs
Position
3883260..3884876
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AA seq
538 aa
AA seq
DB search
MEKLRFEEINLSEEIQRGIRDMGFEEMSPIQSQAIPIVLAGNDIIGQAQTGTGKTAAFGI
PIIERCNPNEKYVQALVLCPTRELSIQVAEEIGKLAKHKKGITVVPIYGGQPIDRQIRAL
KKGVNIVIGTPGRVIDHIKRKTLKVDNVNMMVLDEADEMFDMGFRDDIALVMNELGEDRQ
TIFFSATMPPEIMKFAGQYQTNPEIIKVVHKELTVPKVEQAYFELKQHMKTEILSRLIDM
YNPKLTIVFCNTKKKVDELIEELQSRGYFADGLHGDLKQTQRDTVMNKFRKGTIDILVAT
DVAARGIDVDDIDLVINYDMPQDEEYYVHRIGRTARAGREGKAFSFVAGRDIYKLRDIQR
YTKTKIARKDLPTLKDIQENYTSIMLEKIKEQIDNEDLGKYEKIIETLLEEDYTSFDIAA
ALLKSYMSNNKLEGHEELDMVDFSSKPKSKGKGSGSSSMVRMHINIGKRKGVSPRHILSA
LLEVTGLPKKSVGDIDVYDKFTFIEVPREYEDEVLDGLNGSRIKGTRVKAEIANPKRK
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattaagatttgaagagattaatttatcagaggaaatacaaaggggaattaga
gatatgggatttgaagaaatgtctccaattcaatcacaggctattccaatagttttagcg
ggaaatgatattattggtcaagcacagacaggaacaggcaaaacggcagcctttggtatt
cctattattgaaagatgtaatccaaacgaaaaatatgttcaagcattggttctatgccca
actagagaactttcaatacaagtagcagaagaaatcggaaaacttgcaaagcataaaaaa
ggcataactgtagtacctatttatggtgggcagcctatagatagacaaattagagcactt
aaaaaaggagttaatattgtaattggtacacctggaagagtaatagaccatattaagaga
aagactttaaaggtagacaatgtaaatatgatggtcctagatgaagcagatgaaatgttt
gatatgggatttagagatgatatagctcttgtaatgaatgaattaggagaagatagacag
acaatatttttctcagcaactatgccaccagagatcatgaaatttgcaggacagtaccaa
actaatcctgaaataatcaaagtagttcataaggaacttacagtaccaaaggtagaacag
gcttattttgaattaaagcaacatatgaaaactgaaatattatctagacttatagatatg
tataatccaaaattaaccatagtattctgtaatactaagaaaaaggtagatgaattaata
gaagaacttcaaagcagaggctattttgcagatggacttcatggagatttaaaacaaact
caaagagatacagtaatgaataaatttagaaaaggaaccatagatattttagtggctaca
gatgtggctgcaagaggtatagatgtagatgacatagatttagttatcaactatgatatg
ccacaggatgaagaatactatgttcatagaataggaagaacagctagagcaggtagagaa
ggaaaggcttttagttttgtagctggaagagatatttacaaactaagagatattcagaga
tatactaagactaaaatagctagaaaagatttaccaacattgaaagatatacaagagaac
tatacatctattatgttggagaaaataaaggaacagatagacaatgaagatttaggtaaa
tatgaaaaaatcatagaaactttacttgaggaagattatacttcctttgatattgcagcg
gcattactaaagtcatatatgtctaataataaattagaaggtcatgaagaattggatatg
gtagattttagcagtaagcctaaatctaaaggaaagggttctggttcttcttctatggta
agaatgcatataaatattggaaagagaaaaggtgtaagtccaagacatatcttatcagca
ttactagaagtaactgggcttcctaagaaatcagtgggagatatagatgtatatgataaa
tttacatttatagaagtgccaagagaatatgaagacgaagtattagatggattaaatggt
tcaaggataaaaggaacaagagtaaaagctgaaatagcaaatccaaaaagaaaataa
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