Tenacibaculum jejuense: TJEJU_0029
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Entry
TJEJU_0029 CDS
T05041
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tje
Tenacibaculum jejuense
Pathway
tje03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tje00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TJEJU_0029 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tje03400
]
TJEJU_0029 (mfd)
Enzymes [BR:
tje01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TJEJU_0029 (mfd)
DNA repair and recombination proteins [BR:
tje03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TJEJU_0029 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
SNR13839
UniProt:
A0A238U3Q2
LinkDB
All DBs
Position
TJEJU:34045..37446
Genome browser
AA seq
1133 aa
AA seq
DB search
MSKQTIVNYYQNATKVALVQQALQQEKNHFQLSNLVGSSLSFVISETFKTADKPFLFICN
DKEEAAYYLNDLEQLLGEKNVLFYPGSYRRPYQIEETDNANVLLRSEVLNRINSRKKPAI
IVTYPTALFEKVVTKKELEKNTLKVNQGENLSLDFINEVLFEYNFNRVDFVTEPGEFSVR
GGIVDVFSFSNDEPYRIEFFGDEVDSIRTFDVETQLSKEKLTKVSIMPNVENKALQESRE
SFLKYISPKTVLLIKNQDLLTGNLDKFFRKAEVEFEKLSEDIKHSKPSELFCDGTLIKNQ
LQDFTVAYLDKRHAELVSASHSDKSAAHSGETLKQVQGDGKISFSVRSQPSFNKQFDLLI
EDLNVHHSKGYTNYIFCANEKQAQRFQDIFEDADVEVHYETVVFPIYQGFIDEDQKIVCY
TDHQIFERYHKFRLKNGYAKKQSITLKELTNLEKGDYVTHIDHGVGKFAGLQKIDVEGKK
QEAIKLIYGDRDILYVSIHSLHKISKFNGKDGKSPKIFKLGSNAWKKIKQKTKTRVKEIA
FNLIKLYAKRKLEKGHAFGPDTHMQHELEASFLYEDTPDQFSATQDVKADMEKDQPMDRL
VCGDVGFGKTEVAIRAAFKAVDNGKQVAVLVPTTILAFQHFKTFSERLKQFPVQIDYLNR
FRTAKQKKGVLEGVADGSVDIVIGTHQLTNKNVQFKDLGLLIIDEEQKFGVAAKDKLKTI
KENVDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRHPVETNVVRLSEDIMRDAISYE
ISRGGQVFFIHNRIENIKEVAGMLQRLVPSAKIGIGHGQMEGKKLEELMLAFMNGEFDVL
VSTTIIESGLDVPNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYHMMTEE
ARKRIQALEMFSELGSGLNIAMKDLEIRGAGDLLGGEQSGFINDIGFDTYQKILKEAIEE
LKENEFKDLYPVDENAGPKEYVKEVQIDTDFEILFPDDYVNSITERLNLYKQLGELESEE
ALQVFETNLIDRFGEYPTQVQDLLDSVRIKWLAKSLGLEKIILKQKRMIGYFVSDQQSDF
YNTDAFTKMLMYVKHNSKSCVMKEKQTKNGLRLLITFIKIDTVKKALETLQKV
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaagcaaaccattgtaaactactaccaaaatgctacaaaggtagctttggtacaa
caagccttacaacaagaaaaaaaccactttcaattatcgaatttggtcggctcttcgttg
tcttttgtgatatccgaaacttttaaaactgccgataaaccttttctatttatttgtaac
gataaagaagaagcggcatactatttaaacgaccttgaacaattattgggagaaaaaaac
gtactgttttatcccggttcgtatcgtcgtccgtatcaaatcgaagaaactgacaacgcc
aatgtattgttacgatcggaagtgctgaaccgtatcaattcacgtaaaaaaccagcgata
attgttacctatcctactgccctattcgaaaaagtagtaacgaagaaagaattagaaaaa
aacacactcaaggtaaaccaaggtgaaaacttatctctcgattttatcaatgaagtcttg
ttcgaatacaatttcaatcgtgtagattttgttaccgaacctggtgagttttcagtgcgt
ggaggaattgtagatgtgttttcattttcaaatgacgaaccgtatcgaatcgaatttttt
ggagatgaagtagacagtatccgaacatttgatgtagaaacacaactgtcgaaagaaaaa
ctcactaaagtgagtattatgccaaatgtagaaaacaaggcattacaagaatcacgagaa
agctttttaaaatatatttcaccaaaaacggtattgctgattaaaaaccaggatttactt
actggaaatctcgataaatttttccgcaaagcggaagtagaatttgaaaaactgtcggaa
gacatcaaacattcaaaaccatcagaattgttctgcgacggaacattgattaaaaatcaa
ttgcaagattttactgtggcttatttggataagcgtcatgctgaacttgtttcagcatct
cattcagataaaagtgctgctcactcaggtgagaccctgaaacaagttcagggtgacggt
aagatttcattctcagtccgttcacaaccatcgtttaataaacagttcgatttattaatc
gaagatctaaacgttcatcattccaaaggatataccaactatattttctgtgccaatgaa
aaacaagcgcagcgtttccaagatatttttgaagatgccgatgttgaggtacattacgaa
accgtagtttttcctatttatcaaggatttatcgatgaagatcagaaaatagtttgctat
accgatcatcaaatttttgaacgttaccataagttccgactgaaaaatggttacgccaaa
aaacaatcgattacactaaaagaattaaccaatttagaaaaaggcgattatgtaacacat
atcgatcatggagttggaaaattcgcaggattacaaaaaatcgatgttgaaggaaagaaa
caagaagcgattaaattaatttatggcgatcgcgatattttgtatgtgagtattcactcg
ttacacaaaatttctaaattcaacggaaaagatggaaaatcaccaaagatttttaaacta
ggatcgaatgcgtggaagaaaatcaagcaaaaaacgaaaactcgagttaaagaaatcgcc
tttaacctaataaaactttatgcaaagcgtaaattagaaaaaggacacgcttttggtcca
gatacgcacatgcaacacgagttagaagcgagttttttatatgaagatacaccagatcag
ttttctgcaacgcaagatgtaaaagccgatatggaaaaagaccaaccaatggatcgttta
gtttgtggtgacgttggtttcggaaaaacagaagttgcgattcgtgccgcttttaaagct
gtagacaatggaaaacaagttgccgtattagttcctactacaattttagcgtttcagcat
tttaagacgttttctgagcgtttaaaacaatttcctgtacaaatagattacttaaaccgt
tttcgtaccgcaaaacagaaaaaaggcgttttagaaggtgttgctgatggatctgtagac
attgtgattggaacacatcaattaacgaacaaaaatgtacagtttaaagatttaggttta
ttaattattgatgaagaacagaaattcggagttgctgcaaaagataaattaaaaaccatt
aaggaaaatgtagatacattaaccttaacagcaacgccaattccgcgtacgttacaattc
agtttaatggctgcgcgtgatttatcagtcataaaaacaccaccaccaaaccgtcatccg
gtagaaacgaatgtggttcgtttgtcagaagatatcatgcgtgatgcgatttcctacgaa
atttcacgtggaggtcaggttttctttattcataatagaatcgagaatattaaagaagtt
gccggaatgttacaacgtttggttccttcagcaaaaattggaatcggacatggacaaatg
gaagggaaaaagctagaggaattaatgctggcttttatgaacggagagttcgatgttcta
gtgtctactacaattattgaaagtggattggatgtaccaaatgccaacacgatttttatc
aataatgctaataacttcggattgtcagatttacaccaaatgcgtggtcgtgtaggacgt
tccaacaaaaaagcattctgttattttattacgccaccgtatcacatgatgacggaagaa
gcgcgtaaacgaattcaggctttagaaatgttttctgaattaggaagcggattgaatatt
gccatgaaagatttagaaattcgtggagcaggagatttattaggaggtgaacaaagcgga
tttattaacgatattggtttcgatacctatcagaaaattctgaaggaagcgattgaagaa
ctgaaggaaaatgaatttaaagatttatatcctgttgatgaaaatgctggtccgaaagaa
tatgtaaaagaagttcaaatcgatactgattttgagattttattcccagatgattacgtg
aattctatcacagaacgtttgaatttatacaaacaattaggcgaattagaatcggaagaa
gcgttacaagtttttgaaaccaatttaattgatcgatttggtgaatatccaactcaagtt
caagatttgttagattctgttcgtatcaaatggttagcaaaatcattaggattagagaaa
atcattcttaaacaaaaacgtatgatcggatattttgtatctgatcagcaaagtgatttc
tacaatactgatgcttttacgaaaatgttgatgtacgttaagcacaactccaaaagctgt
gtgatgaaagaaaagcaaactaaaaatggtttacgattattaatcacatttattaagatt
gacacggttaaaaaagcgttagaaaccttgcagaaagtataa
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