Tenacibaculum jejuense: TJEJU_1936
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Entry
TJEJU_1936 CDS
T05041
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tje
Tenacibaculum jejuense
Pathway
tje03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tje00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TJEJU_1936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tje03019
]
TJEJU_1936
03400 DNA repair and recombination proteins [BR:
tje03400
]
TJEJU_1936
Enzymes [BR:
tje01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TJEJU_1936
Messenger RNA biogenesis [BR:
tje03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TJEJU_1936
DNA repair and recombination proteins [BR:
tje03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TJEJU_1936
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
HTH_24
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
SNR15640
UniProt:
A0A238UB49
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All DBs
Position
TJEJU:complement(2111809..2113692)
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AA seq
627 aa
AA seq
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MNTPTEILKKYWGFDSFRPQQLEIIEAVLNNKDTTALLPTGGGKSICYQIPALIKEGVCI
VISPLIALIQDQINSLDKRGIKAFYIPSGSHQDEIVRIFDNLKFGNYKFLYLSPERIQSK
FIQEKIKQLSVSFFAVDEAHCISEWGHDFRPSYTQLSILKELKENTPVIALTATATNKVL
EDIYSTLSLNEPLTFKKSFYKPNLGYRILKSEDKLYRLKEIFTKIKAPAIVYVSSRKKTI
ELSNFLNSKGFKATSYHGGLSLSEKEIAYKNWMNNTCRIIVATNAFGMGIDRADVKIVVH
YDIPNSIENYVQEAGRAGRNNESCYAIMLTNESDIKLTLNLFKDSQPSLEEIKHVHTKLH
QYFKIANGEFIDTGFDFNILDFCNIYNLPVRKVYNILQILNNFGIIELNHFNQKKSTLQF
LIPYGQLSKYKLANPKKNKFIDTLLRMYGGLFEQDVSINEFAIAKILGITSKHLIHLLDE
LHNDQIVNYKKSSKDSMLYFLHPREDNRTINRFSKKIKNLLTYKAQKLGNIIQFIQNDAV
CRNIQLLNYFNEPNAKECGICDVCLKKEKIIDVSKEILAIIKDNREISSREICEKLNYKE
RDILIHLRKLLGEEKIKVTNYNTYLLA
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
ttgaatacacctacagaaatattaaaaaaatattggggatttgattcttttagaccacaa
caactagaaataattgaagccgttttaaataacaaagatactactgcactgctgccaaca
ggaggtgggaaatctatttgttatcaaattcctgcgcttattaaggaaggtgtctgtatt
gttatttctccacttattgcgcttattcaagatcagataaatagtctagataaaagagga
ataaaggctttttacattccttctggaagtcatcaagatgaaattgtacgtatttttgac
aacctcaaatttgggaattacaaatttttgtatctatcaccagaacgtattcaatcaaaa
tttatccaagaaaaaataaaacaattatccgtttctttttttgctgtagatgaagcacac
tgtatttcagaatggggacatgattttagaccgtcgtatacacaattatcaatattaaaa
gagttaaaagaaaatactcctgtaatagctttaaccgccactgctacaaataaagtattg
gaagatatttacagtactttaagcttaaatgaacccttaacgtttaaaaaatctttttac
aaacctaatttaggttatcgcatcttaaaaagtgaggataaattatatagactgaaagaa
atttttacaaaaataaaagcacctgctattgtttatgtttcctcacgaaaaaaaacaata
gagctttctaactttttaaatagtaagggtttcaaagccacatcatatcacggaggatta
tcactgtcagaaaaagaaatcgcttacaaaaattggatgaacaatacatgccgtattatt
gttgctaccaatgcttttggtatgggaatcgatagagctgatgtaaaaattgtagttcat
tatgatattcctaattccattgaaaattatgttcaggaagcaggaagagccggacgtaat
aatgaaagttgttatgctattatgcttactaacgaaagcgatattaaattaactctaaac
ttatttaaagattcacaaccttcacttgaagaaataaaacatgttcacacaaaattgcat
caatattttaaaatagcaaatggtgaattcattgatacaggtttcgatttcaatatatta
gatttttgtaatatttataatttaccagtaagaaaagtatataacatacttcaaatacta
aataattttggaattattgaattaaatcattttaatcagaaaaaatcaaccttacagttt
ttaattccatatggtcaattaagtaaatataaattagctaaccccaaaaaaaacaagttc
attgataccttattaagaatgtatggtggattgttcgaacaagatgtttctattaacgaa
tttgcaatagctaaaattttaggaatcacatctaaacatttaattcacttactggatgaa
ttgcataatgatcaaatagtgaattacaaaaagtcgtctaaagacagtatgctatatttt
ttacatcctagggaagacaatagaacaataaatcgtttttcaaaaaaaataaaaaatctt
ttaacgtataaagcccaaaaacttggtaacattattcaatttattcaaaatgatgcagtt
tgtagaaatatacaattactaaattattttaatgagccaaatgccaaagaatgtggaata
tgcgatgtttgcttgaaaaaagaaaaaattattgatgtttctaaagaaatattagccata
ataaaagataatagagaaatttcatctagagagatctgtgaaaaattaaattataaagaa
agagacatcttaatacatttgagaaaattattaggagaagaaaaaataaaagtaacaaac
tataacacctatttactagcataa
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