Tenacibaculum jejuense: TJEJU_2154
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Entry
TJEJU_2154 CDS
T05041
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tje
Tenacibaculum jejuense
Brite
KEGG Orthology (KO) [BR:
tje00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tje03016
]
TJEJU_2154
Enzymes [BR:
tje01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
TJEJU_2154
Transfer RNA biogenesis [BR:
tje03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
TJEJU_2154
Prokaryotic type
tRNA splicing ligases
TJEJU_2154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF3855
Motif
Other DBs
NCBI-ProteinID:
SNR15848
UniProt:
A0A238UB88
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All DBs
Position
TJEJU:complement(2350951..2352342)
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AA seq
463 aa
AA seq
DB search
MGKRLKGKDLINLGFPQNNSINIALGQINRYRKKEKKERILEEAKDVLLHPEKYQGNAIW
GKVAEGLTKPVEVRMHQLRNTRAPFSIYGENEIDDQAKYQLYDALKLPIAVQGALMPDAH
SGYGLPIGGVLATDNAVIPYGVGLDIGCRMALSIYPMKASYIKGKQHQMENILKEHTKFG
MYETHDKKQDHEIFERSEFRDIPLVRRLKTKAFRQLGTSGSGNHFVEFGIVTITDEKNEF
DLPIGEYVGLLSHSGSRALGANIAKHYTYLASKQCPLPKNVQHLAWLDLNTHDGQEYWLA
MNLAGDYAKACHDNIHKRVAKLLGVKPLAMVENHHNFAWKEQVNGVERIVHRKGATPASK
GELGVIPGSMTAPGYIVRGLGNEESLQSASHGAGRKHSRRKCKEKFTKSDIKHQLNMNQV
SLIGGGIDEAPMAYKNIKKVMANQQELVEVIGTFTPKIVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagagattaaaaggaaaagatctaatcaatttaggatttccacaaaataatagc
ataaacatcgccttagggcaaattaaccgatacagaaaaaaggaaaagaaagagcgcatt
ttagaagaagcaaaagacgtattgcttcatccagaaaaatatcaaggaaatgcgatttgg
gggaaagttgcagaaggtttaacaaaaccagtagaagttagaatgcatcaattacgaaat
acaagagctccattttcaatttatggagaaaacgaaattgatgatcaagcaaagtatcaa
ttatacgatgctttaaaattaccaatagcagtgcaaggcgcattaatgccagatgcacat
tcgggttacggtttgcccattggcggagttttagctacagataatgcagtaattccatat
ggcgtggggttagacatcggttgtagaatggctttaagtatttatccaatgaaagcttct
tatatcaaaggaaagcaacatcaaatggagaatattttaaaagagcatacaaagtttggg
atgtatgaaactcatgataaaaaacaagatcatgaaatatttgaacgtagtgagtttcga
gatattccattagtaaggcgcttaaaaacaaaggcattcagacaattaggaacttcaggt
agtggaaatcactttgtagagttcggaattgtaaccataactgatgaaaaaaacgagttt
gatttacctataggtgaatatgtgggattattatctcacagtggatcaagagctttagga
gctaatatagcaaaacattatacctatttagcgagtaaacaatgtccgttaccaaagaat
gtacagcatctagcttggttagatttaaatacacatgacggacaagaatattggctagct
atgaatttagcaggtgattatgctaaagcttgtcatgataatattcacaaacgagtagca
aagttactaggtgtaaaaccactagcaatggttgaaaatcatcacaattttgcttggaaa
gaacaagtcaacggagtagaacgaattgtacatagaaaaggagcaactcctgctagcaaa
ggagaattaggagtaattccaggatctatgactgcaccaggatacattgttcgaggtttg
ggtaatgaagaaagtttgcagtctgcatcacatggagcagggagaaaacattctagaaga
aaatgtaaagaaaagttcaccaaaagtgatattaagcatcaactgaatatgaatcaagtg
agtttaattggaggtggaattgatgaagcgccaatggcatataaaaacataaagaaagtc
atggcaaatcaacaagaattggtagaagttataggaacttttacaccgaaaattgtaaga
atggataagtaa
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