Tenacibaculum jejuense: TJEJU_3113
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Entry
TJEJU_3113 CDS
T05041
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tje
Tenacibaculum jejuense
Pathway
tje03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tje00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TJEJU_3113 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tje03019
]
TJEJU_3113 (recQ)
03400 DNA repair and recombination proteins [BR:
tje03400
]
TJEJU_3113 (recQ)
Enzymes [BR:
tje01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TJEJU_3113 (recQ)
Messenger RNA biogenesis [BR:
tje03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TJEJU_3113 (recQ)
DNA repair and recombination proteins [BR:
tje03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TJEJU_3113 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
DHquinase_II
Motif
Other DBs
NCBI-ProteinID:
SNR16769
UniProt:
A0A238UC68
LinkDB
All DBs
Position
TJEJU:complement(3495524..3497629)
Genome browser
AA seq
701 aa
AA seq
DB search
MEYQEEALLEKLKTNFGYDSFRLDQQKIITNVLEKKDTLVIMPTGGGKSICYQLPALFFD
GVTLVISPLIALMKDQVDSLRANGIPAMYYNSSQSKEDQDAVFNAVAERKIKLLYVAPES
LPLLQNILNQTYISCIAIDEAHCISSWGHDFRPSYKQLAFLKKSLPEVPIVALTATADKA
TQEDIVEQLVITHATRFISSFNRANISLEVRPGNERIKQIINFIKRSPDEAGIIYCLSRK
ATEQLAKKLQEQNIDASAYHAGLSFEERAKTQEAFVKDDVQIICATIAFGMGIDKSNVRW
VIHYNMPKNIEGYYQEIGRSGRDGLPAKALLFHSYADVIQLRQFIEGTSNKEVQEAKLDR
MKQFAEATVCRRKILLSYFGELIEENCGNCDVCKNPPQFFDGTVIAQKALSAIFRLKGKE
AMGTVIDVLRGAQNATVLDKNYNTLKTYGVGKDISWRDWQHYLVQLVNQGYCQIAFHLNN
ALQLTDFSKKVLFEGEKIQLTAPVEIKKEEKRIVAKTTKTVKKDSLFERLRALRYKIATE
ENIAAYLVFNDATLREIEKDRPLTDNEFLSISGVGQRKLEVYGGEFMEEIKNFLEEKKRG
KKNTALETFKLYSQGLTIEEIAEARALKIPTIFSHLSKLYLEGKDINLDQFTSPETIKEV
ANAKKVLKNETALKPYFEFLGEKVPYEQIRVALTILQKKSI
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggaataccaagaagaagcattgttagaaaagttaaaaactaattttggttacgatagt
tttcgactagatcagcaaaaaataattaccaatgtattagaaaaaaaagatacacttgta
attatgccaaccggtggaggtaaatcaatttgttatcaattaccagcattattttttgat
ggagttacactagttatttcaccattaattgctctaatgaaagatcaagttgatagttta
agagccaatggtattccagcgatgtactataatagcagtcaatctaaagaagatcaagat
gctgtttttaatgcagtagccgaacgaaagattaaattgttatacgtagctccagaaagt
ttaccattacttcaaaatatcttaaatcagacttatataagttgtatagctatagatgaa
gcacactgtatttcatcatgggggcacgattttagaccatcatacaagcaacttgctttt
ttgaaaaaatcacttccagaagttccaatagttgcattaacagcaacagcagataaggca
acacaagaagatattgtagaacaattggtaattacacacgctacacgttttatcagttca
ttcaatagagctaatattagcttagaagttcgtccaggaaatgaaagaattaaacaaatt
attaatttcataaagagatcaccagatgaagctggaattatctattgtctaagtagaaaa
gctacggaacaattagctaaaaaattacaagaacaaaatatagatgcaagcgcataccat
gctggattatcttttgaagaacgagcaaaaactcaagaagctttcgtaaaagatgatgtg
caaattatttgcgcaactattgcttttggaatgggaatcgataaatcgaatgttcgttgg
gtaattcattacaatatgcctaaaaatattgaaggatattatcaggaaatcggacgttca
ggaagagatggtctaccagctaaagctttattatttcatagttatgccgatgtaatacaa
ttgcgacagtttatagaaggaacgagtaataaagaagtacaagaagcaaaattagatcgt
atgaagcagtttgctgaagctacagtttgtagaagaaagattttgttgagttattttgga
gagctaattgaagaaaactgtgggaattgcgacgtatgtaaaaatccacctcaatttttt
gatggaactgtaattgctcaaaaagctttgtcagcaattttcagattgaaaggaaaagaa
gctatgggaacagtaattgatgttcttagaggagcacaaaatgccacagttttagataaa
aattacaatacattaaaaacctacggagtaggaaaagatatttcttggagagattggcag
cattatttagtgcaattagtcaatcaagggtattgtcaaattgcgtttcatttaaataat
gctttacagttaacagatttttcaaaaaaggtattatttgaaggagaaaagattcaatta
acagcacctgtagaaattaaaaaagaagaaaaaagaatagtagctaaaacaactaaaact
gttaaaaaagatagtttatttgagcgtttaagagcattacgttataaaatcgcaacagaa
gaaaatattgctgcttatttagtttttaatgatgctacactgcgagaaatagaaaaagat
cgtccgttaacagataatgagtttttatccattagtggagtaggacagcgtaaacttgag
gtatatgggggagagtttatggaagagattaaaaatttccttgaagagaagaaaagaggt
aaaaaaaacacagctttagaaacctttaaattatacagtcaaggtttaactattgaagaa
atcgcagaagcgagagctttaaaaatacccacaatattctctcatttatcgaaattatat
ctagaaggaaaagatatcaatttagatcagtttacttcaccagaaacaataaaagaagtt
gcaaatgcgaagaaagtattaaaaaatgaaaccgcattaaaaccatattttgaattttta
ggagagaaagttccgtatgaacaaattcgagtagctttaactattttacagaagaaatca
atttga
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