Thermincola carboxydiphila: TherJR_0178
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Entry
TherJR_0178 CDS
T01226
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tjr
Thermincola carboxydiphila
Pathway
tjr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tjr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TherJR_0178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tjr03400
]
TherJR_0178
Enzymes [BR:
tjr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TherJR_0178
DNA repair and recombination proteins [BR:
tjr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TherJR_0178
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
MFD_D3
UvrB_3rd
Motif
Other DBs
NCBI-ProteinID:
ADG81067
UniProt:
D5X9J6
LinkDB
All DBs
Position
186424..189960
Genome browser
AA seq
1178 aa
AA seq
DB search
MGTNGLFTPLIESAEFNSLTAGLKRGLAYQMVYGLSGAQNSYLIAGIIEKLNVPALIMAP
NGIAAKKRLDDLRNFLPNREILYYPELEHVPFGSIAQSKELAAQRLAVLAKLVQQDNLII
VAPVEALYQQLIPRSVFEKFSLCLSVGQIISQEKMIEVFLAQGYERVEMVEGPGQFSVRG
GIIDIFPQTRERPLRIELFDDEIDSIREFKVDSQRSLNRLQEAVIYPAVELVVERENFVK
AADLIAADFAEHGKRLKKIGKYEAFNKLQEKTKEIIEKLRSGLYIEGMEYYFSYFYPEGA
SLLDYLDRKTVLFVEEPSRQKEYLQNRINEMADSHTHYLETGLALPKQGRAYFNPDDLQK
SAKDFSQVGFSLLPKQPAGIRPGNIVSFAGKSIPFFMSKTDLLVEEIRNRRKKGYAIAIM
ASTSNRAEKIRDLLRDSKVDAFYVSRITGELKPGNVIITEGRIEAGFEIGQIKFALITDL
EIYGKRKSGKKATLRHQEGALISHFTDLSVGDYVVHVNHGIGRYLGLQKLEVGGVTKDYL
IIQYTGEDKLYVPTDQISLVQKYLGAEGAAPKLSRLGGQDWNKVKKRVKESVREMAQELL
NLYATREKVVGHAYPPDTVWQKEFEEAFPYEETPDQLRAIKEIKEDMERPKPMDRLLCGD
VGYGKTEVAIRAAFKAVMDSRQVAVLVPTTILAQQHYNTFVERFSGYPIKIEMLSRFRSP
KEQQEILKNLKTGGVDIVIGTHRLVQNDVQFKKLGLVIVDEEQRFGVAHKERLKQLRKNV
DVLTLTATPIPRTLHMSLVGVRDMSILETPPEDRWPVQTYVLEFNWDVIGDAVRKEMDRG
GQVYFVHNRIMDIDQIAAQLRAAVPEARVAVAHGQMKEDQLEQVMLEFLEGEYDVLLCTT
IIETGLDIPNVNTLIVDEADRMGLSQLYQLRGRVGRSHRLAYAYFTYRRDKVLTEVAEKR
LQAIREFTEFGSGFKIAMRDLEIRGAGNFLGPEQHGHMMAVGFDMYCRLLEEAVKELKGD
LIEEIQEPTIDLNIDAHIGNDYIPDAGMKIEIYQKIMRIQSAEDARDVGEELEDRYGPVP
QSVTNLLAIARIKALCTRLKVQAVTQIKDMVHIKFHPSNTVQGEQLAGLAQRYRHRLVFT
GTQALQINLKVKGLSREQALAKVEELLLYLLDEGKLRT
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgggtactaatgggttatttactccactaatagaatcagccgaattcaattcactgact
gccggtttaaagcggggtctggcatatcagatggtttatgggttgtcaggtgcgcagaat
agctacctgatagccggtattatagagaagttaaacgtgccggcccttattatggcgccc
aatggtattgcggctaagaaaaggctcgatgatttgaggaattttttaccaaacagggaa
atattgtattatccggaactggagcatgtgccctttggttccattgcccaaagtaaagag
ctggctgctcagcgcctggctgttcttgccaagttggtgcagcaggacaaccttattatt
gtggcgcctgtggaagctctttatcagcaattgattcccaggtctgtatttgaaaagttc
agtttatgcctttccgtgggccagattatttcccaggaaaaaatgattgaagtatttttg
gcgcagggatacgaaagagttgagatggtggagggccccggccagtttagtgtgcggggc
ggtattatagacatctttccgcaaaccagggagcgtcctctacgcatagagctgttcgac
gatgaaattgattccatcagggaatttaaagtagatagccaaaggtcgctgaataggctt
caggaagcagttatttatcccgctgtcgaactggtcgtagaacgggaaaattttgtaaag
gctgccgacctgattgcagccgattttgccgaacacggaaaaaggctgaaaaaaataggc
aagtatgaagcttttaataagttgcaggaaaaaacgaaagagataattgaaaaactgaga
agcggcctttatattgaagggatggaatattatttttcctatttttatcctgaaggggcc
agtttgctggattacttagacaggaagacggtactttttgttgaagaaccttccaggcag
aaggaatacctgcagaaccgtatcaatgaaatggccgatagccatactcattatctggaa
acaggcctggccctgcccaaacagggaagagcctactttaatcctgatgacctgcagaaa
tcagccaaagatttttctcaggtcggtttttccttgctgcccaagcagcccgccggaata
agacctggcaacatagtcagctttgccgggaaatccatcccctttttcatgagtaaaacc
gatttgcttgtagaggaaattcgcaatcgcagaaaaaaaggttatgccattgccataatg
gccagtacttccaacagggcggagaaaatccgcgacttactaagggacagtaaagttgat
gctttttacgtatcccgaataacgggcgaacttaaacccggcaacgtgattattaccgaa
ggcaggattgaagccggatttgagatcgggcaaattaaatttgcccttattacggacctg
gaaatatacggaaaaagaaaaagcggcaagaaggccaccttaagacaccaggaaggggca
ctcataagtcattttacggatttgtccgtaggtgattacgttgtccatgtaaatcatggg
attgggcggtacctgggcctgcaaaagctagaggtcggtggggttaccaaagactacctg
attatccagtatacgggtgaagataaactttatgtccctactgaccaaataagcttggtg
cagaagtacctgggtgccgaaggagctgctcccaaactgtccaggttagggggccaggac
tggaacaaagttaagaaaagggttaaggaatcggtccgggaaatggcccaggaactacta
aatctttacgcgacccgggaaaaagtggtcgggcatgcttacccgcccgacacagtatgg
cagaaagaatttgaagaagcatttccatacgaagaaacaccggaccaactgcgggccatc
aaagaaatcaaagaagacatggaacgtcctaaacctatggataggttattgtgcggagat
gtaggatacggcaaaaccgaagtggctatccgggccgcttttaaagctgttatggacagc
cggcaggtagctgttttagttcctactaccatactggctcagcagcattataataccttt
gtggaacgtttttcaggctaccccatcaaaatcgagatgttaagccgcttccgctcaccc
aaagaacagcaggaaattttaaagaacttaaaaaccggcggcgtggatatagtaatcgga
acgcatcgtttggtacaaaacgatgtacagtttaaaaagcttgggttggtcattgtggat
gaggagcagcgttttggcgttgcccataaagagcgcttaaaacaattgcgaaaaaatgtt
gacgttctcacccttaccgccacacctattccgcggacattgcatatgtccctggtcggg
gtgcgggatatgagtattttagaaactccccccgaagacaggtggccggtacaaacttat
gtgctggaatttaattgggacgttatcggtgatgccgtcaggaaagaaatggacagggga
ggccaggtttattttgttcataaccggattatggatatagaccagatagcggctcagctt
agggcagccgttcctgaagccagggtagccgtggcccatgggcaaatgaaagaggaccag
ttggagcaggtaatgctggagtttcttgagggtgagtacgacgtgcttctttgtacgact
ataatcgaaacgggcctggatatccccaacgtgaatactcttattgtggatgaagcggac
cgaatgggactgtcgcaattataccaactacggggacgtgtcgggcgttcacatcgcctg
gcctatgcttattttacctaccggcgtgacaaggtgctgacagaagttgcggaaaaacgt
ctccaggctattcgtgagttcaccgaattcggctccggctttaagattgctatgcgtgac
ctggagatccgcggcgccggcaactttctggggccggagcagcacgggcacatgatggcc
gtgggttttgatatgtactgcaggctactcgaggaagcggtcaaagagctgaaaggcgac
ctgattgaagaaattcaggagcctacgatagatttaaatattgatgcgcatataggtaat
gattatatccctgacgccggaatgaaaatagaaatttatcaaaaaattatgcgcatacaa
tctgcggaggatgccagggatgtgggagaagagttggaagaccgttacggccctgtgcct
caatcggtcacaaacctgttggctattgcgcgaattaaggctttgtgtacgcggcttaaa
gttcaggcagttacccagattaaagatatggtccacattaagttccatcccagcaatacg
gtgcagggagaacagttagcaggattggcgcaaagataccgccaccgtctggtgtttacc
ggcacgcaggccttgcaaattaacctgaaggtgaagggtctgtctcgggaacaagcgctg
gctaaagtagaggaattgttgctctatctactagacgagggaaaattaagaacttga
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