Thermincola carboxydiphila: TherJR_0288
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Entry
TherJR_0288 CDS
T01226
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tjr
Thermincola carboxydiphila
Pathway
tjr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tjr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TherJR_0288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tjr03021
]
TherJR_0288
03400 DNA repair and recombination proteins [BR:
tjr03400
]
TherJR_0288
Enzymes [BR:
tjr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TherJR_0288
Transcription machinery [BR:
tjr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TherJR_0288
DNA repair and recombination proteins [BR:
tjr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TherJR_0288
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ADG81174
UniProt:
D5X9V3
LinkDB
All DBs
Position
305955..309305
Genome browser
AA seq
1116 aa
AA seq
DB search
MVYPIKVGKRERWSYARIKEVLDMPNLIEIQQNSYDWFLKEGLREMFYDISPIQDFTGNL
ILEFVDYTLGEPKYSVDECKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTEK
GTFIINGAERVIVSQLVRSPGVYFSEQIDSTGKKLYNATIIPNRGAWLELETDANDNIFV
RIDRTRKLPVTVLIRALGYGSNGKILELFQDDERIRATLERDNTDSEEEALVEIYKRLRP
GEPPTVESARSLLETLFFDPKRYDLANVGRYKLNKKLKLDVPPEVRNLTKEDIVATVAYT
LKLMDGEGKVDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDVDVITPQVL
INIRPVVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHH
SHYGRMCPIETPEGPNIGLIGSLSTYARINEFGFIETPYRKVDKEKGIVTNEIEYLTADE
EDNFVIAQANAPLDEEGRFLTDKVNARHGHEILKVPVDRVDYMDVSPKQVVSIATALIPF
LENDDANRALMGSNMQRQAVPLLRTDAPLVGTGMEYKAATDSGVVVLAKRSGVVTKVTAN
EIRIKTDDGNEDVYKLLKFTRSNQGTCMNQKPIVVKGARVEAGEVIADGPSTDQGELALG
RNVLVAFMPWEGYNYEDAILVSKKLVKEDYFTSIHIEEYECDARDTKLGPEEITRDIPNV
GEEVLKDLDDRGIIRIGAEVRPGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTS
LRVPHGESGKVVDVKVFSRENGDELAPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVIA
RILPEEDMPFMPDGTPIEIVLNPLGVPSRMNLGQVLETHLGWAAKTMGIYMATPVFDGAT
EEDVFETLQKAGLPTTGKTILYDGRTGEPFDNPITVGYVYMLKLAHLVDDKIHARSTGPY
SLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKG
ENVPEPGVPESFKVLIKELQSLGLDVKVLSEEDEEIEIKEVEDDVSETAKELGLDIEHPD
DGPQDEPEEEEEEEDTLDDDFDASFMDDDFDFIEED
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atggtctatccgataaaggtgggaaaacgggagagatggagttatgccaggattaaagaa
gttctcgacatgccgaacctgatagaaattcagcagaactcctacgactggttcctaaaa
gaaggtttgcgggaaatgttttatgatatttccccgatccaggattttactggcaatctg
attttggaatttgtcgattatactctcggcgaacccaaatattcagtagatgaatgtaag
gaacgggacgtaacctatgcagctccgctcagggtaaaagttcgcctaattaacaaggaa
accggggaagtaaaggaacaggaagtattcatgggtgattttcccctgatgacagaaaag
ggaacttttattattaacggagcggaacgggttatcgtcagccagttagttcgttcaccc
ggcgtttatttttcagaacagattgattctacaggtaaaaaactctacaatgccactatc
attcctaaccggggagcctggttggaacttgaaactgatgctaatgacaatatttttgtg
cgtattgaccggaccagaaagctgcctgttaccgtattaatcagagctttgggctatggt
agcaacggtaaaattcttgagttgttccaggacgatgaaagaattagggcgaccctggaa
cgtgataatactgattctgaggaagaagctttggttgaaatatataagaggcttcgtccg
ggcgaacctcccactgttgaaagtgcgcgttcgctcctggagactttgttctttgatccg
aagagatacgacctggctaatgtgggtaggtataaattaaataaaaaactgaaattggat
gtaccacctgaagtacggaatctaaccaaagaagatatcgttgctactgtggcctatacc
ctgaaattgatggatggggaaggtaaagtggatgatatcgaccatttaggcaacaggcgc
ttgcggtctgtcggggaattgctgcagaaccagttccgcatagggttatccaggatggaa
cgggttgtgcgtgaaagaatgaccattcaggacgtagatgtcattacaccccaggtatta
attaatatcagacccgtagtggcggccatcaaggaattctttggcagcagccagctatca
cagtttatggaccagaccaaccccttggctgaattaacgcataagagaaggcttagtgcc
ttaggacccggcggtttgagcagggaacgggcaggcttcgaagtccgtgacgttcaccac
tcccactatggacgtatgtgcccgatagaaacgccggaaggtcccaacattggtttgata
ggatctctcagtacatatgcgcggattaacgaattcggttttatagagactccatatcgc
aaggttgacaaggaaaagggcatagttaccaatgaaatagagtacttaacggcagatgaa
gaagataatttcgtgattgcccaggccaacgctcctctggacgaagaaggaaggtttctg
accgataaggttaatgccagacatggccatgagatactgaaggttcccgttgaccgcgtt
gattatatggatgtttctcctaaacaagttgtcagtatcgctactgcgttgataccattt
ctcgaaaatgacgatgccaacagggcattgatgggctcaaacatgcagcggcaggctgtt
ccgttgctacggactgacgcccctttggttggaacgggtatggaatataaggccgccacc
gattccggtgttgtcgtccttgcgaaaagaagcggcgtagtaactaaagtcactgccaac
gagattagaataaaaaccgatgatggaaacgaagatgtttacaaattattgaagtttacc
aggtctaaccaggggacttgcatgaaccaaaaaccgattgtggtaaaaggcgctagggtt
gaagcaggtgaagtcattgcggacggaccttctacggaccagggagaactggctctcggc
cgtaacgtattggttgcttttatgccctgggaaggttacaactacgaagacgctatatta
gtcagtaaaaaacttgtcaaagaagattatttcacctctattcacatagaagaatatgaa
tgtgatgcccgtgataccaaattgggtcccgaagaaattaccagagatatacccaacgtg
ggcgaagaagtgctgaaagaccttgacgacaggggcatcatcagaataggtgcggaagta
aggccaggcgacattcttgtcggtaaagttactcccaagggagaaacggagcttactgcc
gaagaacgcttgttaagggcaatttttggcgaaaaagcaagggaggttcgcgatacttcc
ctccgggtaccgcatggcgaatccggcaaagttgttgacgttaaagtattttccagggaa
aacggcgatgaattagcccccggtgttaaccaactggtgcgggtttatattgcccagaaa
aggaagatatccgagggtgataaaatggcaggtcgtcacggtaacaagggtgttatcgcc
cgtattttaccggaagaggatatgccgtttatgcctgacggaactccgattgaaatagtg
cttaatccactgggtgttccttcgcggatgaacttgggtcaggttttggagactcatttg
ggttgggctgccaagactatgggtatttatatggcaacacctgtttttgacggggcaaca
gaagaggatgtatttgaaacactgcaaaaagccggtctgcctactaccggaaagactata
ctctacgatggacgaacgggagagccctttgataaccccataactgtcggatatgtttat
atgctgaaattggcccacctagtagacgataaaattcacgccagatcaacaggtccctat
tccctggttacccagcaaccgctgggtggtaaagcgcaattcggtgggcaaaggtttggg
gagatggaggtctgggccctcgaagcgtacggtgctgcctacactttgcaggagattctc
accgttaaatccgacgatgtggttggccgggttaagacatacgaagctatcgtaaaaggc
gaaaatgtacctgaacccggtgttcctgagtccttcaaagtattaattaaagaattgcag
agtttgggcttggatgtgaaggttctttccgaagaagatgaagaaattgaaataaaagaa
gtcgaggatgacgttagcgaaacggccaaggaactgggcctggatattgaacatcccgat
gacgggccgcaggatgaacctgaagaagaggaagaggaagaagacacgctggatgacgat
tttgatgccagtttcatggatgacgatttcgattttatagaggaagactag
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