Thermincola potens: TherJR_0289
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Entry
TherJR_0289 CDS
T01226
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tjr
Thermincola potens
Pathway
tjr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tjr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TherJR_0289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tjr03021
]
TherJR_0289
03400 DNA repair and recombination proteins [BR:
tjr03400
]
TherJR_0289
Enzymes [BR:
tjr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TherJR_0289
Transcription machinery [BR:
tjr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TherJR_0289
DNA repair and recombination proteins [BR:
tjr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TherJR_0289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ADG81175
UniProt:
D5X9V4
LinkDB
All DBs
Position
309366..312833
Genome browser
AA seq
1155 aa
AA seq
DB search
MLDVNNFDRMRIGLASPEQIRAWSSGEVKKPETINYRTLKPERDGLFCERIFGPTRDWEC
HCGKYKRVRYKGIICDRCGVEVTRSKVRRERLGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRSLEKVLYFVSYIVIDPGDTPLMKKQLLTENEYREYREKYGNSFKAGMGAEAIKKLLE
EIDLDALAKELRQELREVTGQRRVRAIRRLEVVEAFRKSGNRPEWMILTVIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELQLHQCGLPKE
MALELFKPFVMKKLVNDGHAHNIKSAKRMVERVRPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIQIHPMVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLSAHNIL
NPKDGRPVAIPTQDMVLGCYYLTLEKDGAKGEGKVFKDVNEAIMAYETGSVDLHAKVKIR
IGGQLVDTTVGRAIFNEVIPEELRFINEVANKKVLGNIVAKAYRELGYSATAKMLDGIKR
TGYKFATRAGVTIGIEDITIPAEKKEILANAEKNVELVEQQYRRGLITEEERYQKVIGIW
NEATDKVTSALLKTLDKFNPVYMMATSGARGNIQQIRQLAGMRGLMADPSGRIIDLPIKA
NFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTTNGIV
VEEIKDGSETIENLADRIIGRVAGEDILHPETGEVLVRYNEEINEKIAEAIINAGVKKVK
IRSVLTCKTRYGVCKKCYGRNLATGRQVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVA
GDDITQGLPRVEELFEARKPKGQAIITEISGTVAIQEVKGRREIEVTNADGEKQLYQIPY
GARVRVKDGDYVEAGDELTEGSVNPHDMLKIKGLKGVQLYLVHEVQRVYRLQGVDINDKH
IEVMVRQMLRKVKVEDPGDTDLLPGGLIDVFDFEEENAKIIANGGQPATARPVLLGITKA
SLATDSFLSAASFQETTRVLTEAAIKGKLDPLLGLKENVIIGKLVPAGTGMSRYRNIIVE
PNEKEEDLKNLDSAQ
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
ttgttagatgtaaacaattttgaccggatgcggattggtttagcttccccggaacaaatc
agggcgtggtccagcggggaagttaaaaaacctgaaaccataaattaccgcactttgaag
cctgaaagggacgggcttttctgtgaacggatttttggtcccaccagggactgggaatgc
cactgcggaaaatataaaagggtgcggtacaaaggcattatttgtgaccgttgtggtgta
gaggtaaccaggagcaaggtccgccgggaaagattgggccacatcgagttggcagcgccg
gtttcccatatctggtattttaaaggtattcccagcagaatgggtttgttattggatatg
tcgccccgttcactggaaaaggttctatactttgtttcttacatagtaatagacccgggt
gatactccgttaatgaaaaagcagcttttgacggagaatgagtaccgggaatacagggaa
aagtacggtaattcttttaaagcaggtatgggagcggaagctatcaaaaagctgctcgaa
gaaattgacctggatgctctcgccaaggaactgcgacaggaactacgtgaggtaacgggg
cagagaagggtcagagctatccgcaggctggaagttgtggaagcttttagaaagtcgggg
aaccgccccgaatggatgattttgacggtaattccggtaatcccgccggaattaagacca
atggtccaactggatggtgggcgtttcgcaacttccgatttaaacgatttatacaggaga
gttattaatagaaacaaccggttaaagaggttgcttgatttaggagctcccgatattata
gtcagaaacgaaaagaggatgctccaggaggctgttgatgccctgattgataatggccgg
cgcggacgccctgttaccggaccgggcaaccgtccgttaaaatcactgagtgatatgctc
aaggggaaacaggggcgtttccgccagaacttgctgggtaagcgggttgactactcgggt
cgttctgtaatcgtggtaggaccggaattgcagttgcatcagtgtggtctccccaaagag
atggccctggaattgtttaaaccctttgtaatgaagaaactggtcaatgatggccacgct
cataatataaaaagcgctaagagaatggtggagagggtgcgcccggaagtatgggacgta
ctggaagaagttattaaggaacatcctgtgctgttaaacagggcgccgacccttcaccgg
cttggtatccaggcctttgagccggtattggtagaaggacgtgccatccagatccacccg
atggtatgtacagcttataacgcagactttgacggtgaccagatggcggtgcacgtacca
ttgtctgccgaggcgcaggctgaagcgcgtttgttgatgctatcggcccataacatcctg
aatccaaaggatggccgaccggtagcgataccgactcaggacatggtacttggttgttac
tatctgaccctggagaaggatggagcaaaaggggaaggtaaagtcttcaaggatgttaac
gaagccattatggcctatgagaccggttccgttgacctacatgccaaggtgaaaatcaga
attggcggccaacttgtagatactactgtcggtcgggctatctttaacgaggtaatacct
gaagaactcaggtttattaacgaagttgccaacaaaaaagttcttggcaatatcgtagcc
aaggcataccgcgaactgggatattcagcaacggccaagatgcttgacggtataaagaga
accggctacaaatttgctacccgggccggagtaacgattggtattgaagatataaccatt
cctgcagaaaagaaagagattttggctaatgcggaaaaaaatgtagagctggtagaacag
cagtacaggcggggtttgattaccgaagaagaaagataccagaaggttatcggtatctgg
aacgaagctacggacaaagtgaccagcgccctgttgaagacgttggataaatttaaccct
gtatatatgatggctacatccggtgcccggggtaatatccagcagattcgtcagttggcc
ggtatgcggggtttgatggccgatccgtccggtaggattatagacctgccgattaaagcg
aatttccgtgagggtttaacggtattggaatactttatctccacccacggtgccaggaaa
ggtcttgctgatacggcgttaaggacagcagactccggctatctgaccaggcgtctcgtt
gacgtagctcaggatgttattgtaagggaagaagactgtggcaccacaaacggaattgtg
gtagaagaaatcaaggatggctctgaaaccatagaaaacctggcagaccggattattggc
cgggtagccggtgaagatatcttacatcccgaaacgggagaagtactggtacgttataat
gaagaaatcaatgaaaaaatcgctgaagctatcattaatgccggtgtcaagaaagtaaag
attaggtctgttttgacctgtaaaacccgttatggtgtatgcaaaaaatgctatggcaga
aaccttgctactggacgtcaggtagatataggtgaggcggtaggcattattgctgcccag
tccatcggtgagccggggacccagctgacaatgagaaccttccatacaggaggtgtggca
ggtgacgatattacgcagggtctgccaagggttgaggaactttttgaggcccggaaaccc
aaaggccaggctataattacggaaatcagcggtactgtagccattcaggaggttaaaggc
cgtagggaaatcgaagttaccaacgcagatggggaaaaacagttatatcagattccttat
ggcgccagagtcagggtcaaagacggagattatgtggaagcaggggatgaacttacggaa
ggttccgttaacccgcacgatatgctgaaaataaaaggtctaaagggagttcaactgtat
ctggtacatgaggtacaaagagtataccgcctgcagggagttgacattaatgacaaacac
attgaagttatggttcgccaaatgctgcgcaaggtgaaagtagaagaccctggcgataca
gaccttctgcccggtggtttgatagatgtcttcgatttcgaagaagagaacgcgaaaatt
attgccaacggcggacagccggcaacggcgagaccggtgttgttagggattacaaaagct
tcactggctacagattcgttcctgtctgccgcttccttccaggaaacgacaagggtatta
acagaagcagctattaaaggtaaactggatccgctccttgggctgaaagagaacgtaatt
attggaaagttggtaccggcgggaactgggatgtcaagatacagaaatataatagtggaa
ccaaacgaaaaagaagaagatttgaaaaatcttgacagcgctcagtaa
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