Thermincola potens: TherJR_1205
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Entry
TherJR_1205 CDS
T01226
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tjr
Thermincola potens
Pathway
tjr03410
Base excision repair
tjr03430
Mismatch repair
tjr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tjr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TherJR_1205
03430 Mismatch repair
TherJR_1205
03440 Homologous recombination
TherJR_1205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tjr03400
]
TherJR_1205
DNA repair and recombination proteins [BR:
tjr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
TherJR_1205
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TherJR_1205
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TherJR_1205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
Helicase_C
DEAD
HIRAN
DHHA1
ResIII
Helicase_C_2
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ADG82069
UniProt:
D5XEJ8
LinkDB
All DBs
Position
1274314..1278015
Genome browser
AA seq
1233 aa
AA seq
DB search
MEHYKKIWSFHNNNTFIQELLARRLGISKITAQILANRGICSVEEARTFLFGSLEDLYDP
LQMHGMEEAVQRIKQAIKENQRILVYGDYDVDGITSTVLLLDTLEFLGAACDFYIPHRLT
EGYGLNINSLKTIKEQGFNLVITVDCGISSADEVSWARDNGLEIIITDHHEPPEHIPQAY
AVINPKQAWCTYPFKELAGVGVAFKLAQALLRAHEKEYLVPKLLDLVALGTVADMVPLVG
ENRITTKQGLQLINAGHREGLAALIEVAGLADQSIDSEQIAFALAPRLNAVGRIDHAAKG
VRLLREKNREMAVSIAKALDRANKERQAIENLIFTEAVEIIESNSLLDNKALVLARPDWH
LGIVGIVASKLVNRYCRPVILLSVNGEVAKGSARSIPGFNLFAALQSCEAFLKKYGGHSQ
AAGLTLNVDDISAFTAAFNEIVDQQITAEHMAEALPIDGEISFKDVTFDLYNQLVALEPF
GFGNPTPLFACRQADIIDCRKVGSDGKHLKMKIMNEKLLMEAIGFNLSACQNSIDFADKI
DIVFELKKNDWNGRSNLQLNVRAIKQAGSPDNPFRASSPSAEQETSKSFLDELFDHAAEY
LVDDYYRNIGEKEEFYTKVVGVTFDNRQEIVARLREGEKLFLVREHNNPHDPNAVRVENR
TGEQVGYLNARLAKHFAPLLDKGEQYLTLVSNVTGGQDKNYGLNIIIQKVQDKSFAEKRA
ILADIRKRLKSLDEKKLLEAVRGALLGPYPYRESQLAALQSLLEGNNTLAIFGTGRGKSA
VFQSMAVYKAIKEDALTIIVYPLRALVNDQYEAMLNKLSALGMRIYKGNGTLSAGERAML
FAVLEAGDIDILLTTPEFLSFHMEKILAMPKKIGLFVVDESHHISMSSLSHRPAYKRISH
IAEGLGRPLTLAVTATANDEVAQEIIAALAINQVVIDPYVRKNLQLIDKRGIEDKSAYIK
QVLATGGKTIIYVNSRLKAVELALMLREANPHLADKIAYYHAGLKNEHRHTIEKMFKEGE
LLAIVATSAFGEGIDIPDVRHVVLYHLNFNFTEFNQQSGRAGRDGGTSHIHLLCGPKDIR
INEFILELAAPGRDFLAALYTALQQLKNDWGEIRLTNKEIAHKMEKAGMRLAKDSSVSSG
LGILEELGLIRRESVGRERQIFVNPPPGNKINLENSLRFLEGQEEKAAFQEFQQAFFDAS
SEELLNQVNRAIFPSKYATNSGIEGQMLNSTLG
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atggagcattataaaaagatctggtcttttcacaataacaacacttttatccaggaactt
ttggcccgccggttaggtatttctaaaataacggcccaaattttagctaataggggcatc
tgttctgttgaggaagcccggactttcctttttggttctctggaagacctgtacgacccc
ttgcagatgcacggcatggaggaggcagtacagcgaataaagcaggctatcaaagaaaat
cagcgtattttggtgtatggtgactacgatgtggacggcataaccagtacggtattactg
cttgacactcttgaatttctgggcgctgcttgtgacttttacataccgcaccggctgaca
gaaggctacgggttaaatataaatagcctgaaaacgattaaggaacaaggtttcaattta
gttattactgttgactgtggaatatcttccgctgatgaagtgtcctgggcccgggacaac
ggactggagattattattactgaccaccatgagccgccggaacatatcccgcaggcttat
gccgtgatcaaccccaaacaggcctggtgtacatacccttttaaagaattggccggcgtg
ggcgtggcctttaaacttgcccaggcgcttttacgggcccatgaaaaagaatacttggtc
cccaaattgctggaccttgtagccttaggcacggtagctgatatggttccgctagtcggg
gaaaacaggattactactaagcagggtttgcaattaattaatgccggccatcgggaagga
ctggcagccctgattgaggtggccggtctggcggaccaaagcattgattcggagcagatt
gcctttgctcttgcgcccaggctaaatgccgtgggcagaattgaccatgcagctaaaggt
gtaaggttactgcgggaaaaaaacagggaaatggctgtcagtatcgccaaagcgctggac
agggccaacaaggaaagacaggccattgaaaatcttatttttacggaggctgtggaaatt
atcgaaagtaatagtcttttagacaacaaagcgttggttttggctcggcctgactggcac
ctgggaatagtcgggatcgttgcttccaaattggttaacaggtactgtcggccggtgatt
ttgttgtctgtgaacggcgaggttgctaaaggttcagccagaagcataccgggcttcaac
ttgtttgcggccctgcagtcgtgcgaggcgtttttaaagaaatatggaggccacagccaa
gctgccggtttaactttgaacgttgatgatatttctgcttttaccgctgctttcaatgaa
attgtggatcaacagattactgcagagcatatggccgaagcgctcccaattgacggagaa
atctctttcaaggatgtgacctttgatttatataaccaactggtggcgttggaacctttc
gggtttggcaacccgacgccgctctttgcttgccgtcaggcggatattattgattgtcgg
aaggtcggtagcgatggtaagcacctgaaaatgaaaataatgaacgaaaagctgctgatg
gaagctattggttttaatttatcggcatgccaaaattcaatagatttcgcagacaaaata
gatatagtttttgaactgaagaaaaatgactggaacggcaggtccaacctgcagttaaac
gtcagggccataaaacaggcaggttctcccgacaatccttttagagccagctccccatcc
gcagaacaggagacgtcgaaaagctttcttgacgagctgtttgatcatgcggcagagtac
cttgttgacgactactaccgcaatattggtgaaaaggaagagttttatactaaagttgtc
ggtgttacttttgataacaggcaggaaattgtggccaggctgagagaaggagaaaaattg
ttcctggtccgggaacacaataacccgcatgacccaaatgcagtgcgggttgaaaacagg
accggagaacaggtaggatatctcaatgcccgtttagccaaacattttgcgccgttgctg
gataaaggggaacaatacctgaccctggtttccaatgtaaccggcgggcaggataaaaac
tacgggctgaatattattattcaaaaggttcaggataaatcttttgctgagaaacgggct
attcttgcagacatcaggaaacgcctaaaatccttggacgaaaaaaaattattggaagct
gtccggggagcactcctggggccttacccctatcgggagtcgcagcttgcggctttgcag
agccttttggaaggtaacaataccttggctatttttggaacgggcagaggtaaatccgct
gtctttcaatccatggctgtgtataaagccattaaagaagatgccctgaccatcatagtt
tatcctctgcgcgctctggttaatgaccaatatgaagccatgttaaacaaactttcagcg
ctgggcatgcgcatttataagggcaacggcaccctcagcgccggcgaaagggcgatgctt
tttgccgtattggaggccggtgatatagatattttgttaactacgcctgagtttttgtct
ttccacatggaaaaaatcttggccatgcccaaaaaaataggactgtttgtggtggacgaa
agccatcatatcagcatgtcttcattatcccaccggcctgcatacaaacgtatttcccat
atagcggaaggcctgggccggcctcttactcttgccgttaccgcaacagccaacgatgaa
gttgcgcaggaaataattgccgcgctggctattaaccaagtggtcatcgacccatatgtg
aggaaaaacttacagttaatagataaacgagggattgaggataaaagcgcttatattaaa
caggtgctggccaccggcggaaaaacgattatctatgttaacagccgtctgaaagctgtt
gaactggccctgatgctaagggaagctaatcctcatctagccgataaaattgcctattac
catgccggactgaagaatgagcaccggcatacaattgaaaaaatgtttaaggaaggcgag
cttctggctattgtggcaacttctgcctttggtgaaggaattgacatccctgatgtacgg
catgtagtattgtaccacctgaatttcaattttaccgagtttaaccagcagagcggccgg
gccggtcgcgacgggggtacaagccatattcacctcctttgtgggccaaaggatatcagg
atcaacgaatttatcctggaattggcggcgccggggcgggattttctggctgcgctttat
acagcgctgcagcagttgaaaaacgattggggagaaatcaggttaaccaacaaagaaatt
gctcacaaaatggaaaaggcggggatgcgcctggccaaggacagttctgtatccagcggt
ctgggcatactggaagaattaggacttatacgccgggaatcggtcggaagagaaaggcaa
atatttgtcaacccgccgccgggaaataaaataaacctggagaactcgttgcgatttctt
gagggacaggaagagaaagcggcttttcaggaatttcagcaggcgttttttgacgcttca
tcagaagaactgctcaatcaggtaaaccgggcgatttttccgagtaaatatgcaacaaat
tccggaattgaagggcagatgctcaatagcacattgggataa
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