Thermincola potens: TherJR_1385
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Entry
TherJR_1385 CDS
T01226
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tjr
Thermincola potens
Pathway
tjr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tjr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TherJR_1385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tjr03019
]
TherJR_1385
03016 Transfer RNA biogenesis [BR:
tjr03016
]
TherJR_1385
Enzymes [BR:
tjr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
TherJR_1385
Messenger RNA biogenesis [BR:
tjr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TherJR_1385
Transfer RNA biogenesis [BR:
tjr03016
]
Prokaryotic type
tRNA degradation factors
TherJR_1385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
KH_2
Nucleoporin_C
Motif
Other DBs
NCBI-ProteinID:
ADG82242
UniProt:
D5XF21
LinkDB
All DBs
Position
1449295..1451502
Genome browser
AA seq
735 aa
AA seq
DB search
MSNYNLLACISRGGYDFNIMDSSPVIIRSFPIGGREMVIETGRMAKQATGAVFCRYGDTA
VLVTATCSPEPREGIDFFPLTVDYEERLYAVGKIPGGFIKREGRPSEKAILSSRLIDRPI
RPLFPKGYRNDVHIVATVLSVDQDNAPDVTAINGASAALMISGIPFLGPIGAVVVGRVDG
KFIINPTIAQAEVSDMHLTVAGTKDAVIMVEAGAKEVPEEVILEAISYGHEEIKKIVSFL
EDFTRECLDAGVAKPRQEPVLFLLDEEIEKQVREYAYDKMFDTLKECIEKRFPKKQREDF
IENAKEEIKTYFAEKVFPEDEAALKHVADAVNKLEKEIMRKFIIQDRIRIDGRKLDEVRP
IECHVGILPRTHGSGLFTRGQTQVLTVTTLGAVGDEQILDGLGVEESKRYMHHYNFPPYS
VGEARFMRGPGRREIGHGALAERALEPMIPSEDEFPYTIRLVSEVLESNGSSSMGSVCGS
TLSLMDAGVPIKRPVSGVAMGLIKEEDAFAVLTDIQGMEDHLGDMDFKVAGTEKGVTAIQ
MDIKIAGISKEILQVALTQAREGRMHILSKMLEVIDKPRPEISPYAPRIITFTIDPEKIR
NVIGPGGKTIKKIIDETGVKIDIEDDGRVFIAAVDVEAGRRAREIIDKLTADVEVGKMYL
GRVVKIMDFGAFVEVLPGKEGLVHISQLAEQRVGKVEDVVSVGDEIMVKVTKIDEQGRIN
LSRKEALKAQQQTES
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaactacaatttgttggcatgtatttcaagaggaggttatgactttaatattatg
gattctagcccagtaattatacgcagtttccctatcggcggccgggaaatggtaattgaa
accggtaggatggccaagcaagcgacaggtgcagtattttgccgctacggtgacactgcc
gttttggttacagcaacgtgttcgcctgagccccgggagggaatagacttctttccttta
acggttgattacgaggaacgtctttatgctgttgggaaaattccgggagggtttatcaaa
agggaaggacggcccagcgaaaaggctattttgtccagccggctgattgacaggcctatc
cgccccttgtttccaaagggttacaggaatgatgtacatattgtagccaccgttctgtct
gttgaccaggacaatgctcctgatgtgacagctattaatggagcttcggccgcccttatg
atatccggcattccgtttcttggacctattggagcggtagttgtcggacgggttgacggc
aaattcattattaacccgacaattgcccaggcggaagtaagcgatatgcatttaacggta
gccggtaccaaagacgcagttattatggtggaagcgggcgccaaggaggttcctgaagaa
gttatcctggaagctatttcttacggacatgaggaaatcaaaaaaattgtatcattcctc
gaggatttcacccgggaatgtctggatgccggtgttgccaaaccacgccaagagccggta
ttatttctgctggatgaagaaatcgagaaacaggtccgtgaatatgcttacgataaaatg
tttgacaccttaaaagagtgtatcgaaaaacgtttccccaaaaagcagcgggaagatttc
atagagaatgccaaagaggaaatcaaaacatactttgcggaaaaagtctttcccgaagat
gaagccgctttaaaacatgtggctgacgccgttaataaactggaaaaagagataatgcgc
aagtttatcatccaggacagaatcaggatagacggtcgtaaactggacgaggtgcgtccc
atcgaatgtcatgtggggattctgccaaggacccatgggtcgggcctttttaccaggggc
cagactcaggttttgaccgtaacgacgctgggagctgtcggtgatgagcagattttggac
gggcttggggtggaagaatctaaacgctatatgcaccactataatttcccaccttacagt
gtgggagaagcccgtttcatgcgcggccccggacggcgtgaaattggtcacggcgccctg
gctgaaagagcgctggaaccaatgattccatcggaagatgagtttccttataccatcagg
ttagtatccgaggtgttggaatcaaacgggtcttcttctatgggaagtgtttgtggatct
accctttcactgatggatgccggcgtacctatcaaacgtcctgtatccggagtggccatg
gggttaatcaaagaggaagatgccttcgccgtgttgactgacatccagggtatggaagat
cacttaggcgacatggatttcaaagtggccggaactgaaaagggtgttacggctattcag
atggacatcaaaattgccgggatcagcaaggaaatcttgcaggttgctttgacacaggcc
agggaaggcagaatgcatatattgtctaaaatgcttgaagtaattgataagccaaggcct
gaaatttcaccctatgccccgcgtatcattacctttaccattgatcccgagaagataaga
aatgttatcggtccgggcggcaaaacgattaaaaagattattgatgaaacgggtgtaaaa
attgacattgaagatgacggccgtgtattcattgccgccgttgacgtggaagccggccgg
cgggcacgggaaataatagacaaacttactgccgatgtggaagtcggtaaaatgtacctg
ggaagggtagtaaagattatggattttggcgcctttgtagaggtgctgcccggcaaggaa
ggcctcgttcatatatctcagttggccgaacaaagggtaggcaaggtggaagatgttgta
tccgttggtgatgagataatggttaaagtaaccaagattgatgaacagggcagaataaac
ctgtccaggaaagaagccctgaaagcgcaacagcagactgaaagttaa
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