Thermincola potens: TherJR_1439
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Entry
TherJR_1439 CDS
T01226
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tjr
Thermincola potens
Pathway
tjr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tjr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TherJR_1439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tjr03019
]
TherJR_1439
03009 Ribosome biogenesis [BR:
tjr03009
]
TherJR_1439
Enzymes [BR:
tjr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TherJR_1439
Messenger RNA biogenesis [BR:
tjr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TherJR_1439
Ribosome biogenesis [BR:
tjr03009
]
Prokaryotic type
rRNA helicases
TherJR_1439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
ARM_TANGO6
AAA_19
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ADG82296
UniProt:
D5XF75
LinkDB
All DBs
Position
1514758..1516347
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AA seq
529 aa
AA seq
DB search
MLETKTFESLQLSRRILQAVKEMGFEEPTPIQAEAIPVLLNGHDVIGQAQTGTGKTAAFG
IPILEKLNPRYRAVQALVITPTRELAIQVAEEIMKLGKFKDVRTLAVYGGQSIDRQIGAL
KRGVQVVVGTPGRLLDHINRGTLRLQHLKMLVLDEADEMLDMGFIDDIEAIIKETPETRQ
TLLFSATMPHEIQQLARKYLKNPRLVAVSKDELTVPSIEQVYYEVREKTKLESLCRVLET
IDVTLAIIFCKTKRGVDELVASLETRGYQAEGLHGDLTQAQRNKVMRKFKNGQVDYLVAT
DVAARGLDIENVSHVINYDIPQDPEVYVHRIGRTGRAGRSGKAITFIVPEEYRQLRLIEK
IIGARIARKNLPSIADIFERQKVQMIDKVANTINGGQLDIYRDIVQELAADYNLIDIASA
ALKLALDLELPAKEIEVDEADFGETGARPGMVRLFMNIGRQEEMTPPEIIKLIAEEAAIP
GKSIGAIRIFDRFSFVEVPQQVAEQVMYSLHKTEVKGKKLFVEPAKVRK
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgctggaaacgaagactttcgagagtctgcaactgagcaggagaattttacaggccgtt
aaagaaatggggtttgaagaaccgacaccgattcaggcagaggctattcctgttctattg
aacggccatgatgtaattggtcaagcccagacgggcacaggtaagacggcagctttcggc
attcctattttagaaaagctaaatcccaggtacagggccgtccaggcgctggtgatcact
cccaccagagaactggctatccaggtggccgaagaaataatgaaactgggtaagttcaaa
gatgtaagaactttagctgtctacggcggacagtccattgaccggcaaataggggctctc
aaacggggagtgcaggtagtagttggaacgccgggacgcctgttggaccatataaacagg
ggaacgttgcggctgcagcacttaaagatgctggttttggacgaagctgatgaaatgttg
gatatgggcttcatcgatgatatagaagccataatcaaagagactcctgagaccaggcag
accttactgttttcggccactatgccgcatgagattcagcaactggccaggaaatattta
aagaaccccaggttggtcgctgtcagtaaagacgaactcaccgttccttccattgaacag
gtatattatgaggtcagagaaaagaccaagctggaaagcctgtgccgggtcctggaaacc
atcgatgtaacccttgctattatattctgcaaaaccaaaagaggtgtggatgagttggtc
gccagcctggaaacaaggggataccaggcagaagggctgcatggcgatttaacccaggcc
caaaggaataaggtgatgcgaaagtttaagaatgggcaggttgattacctggtagctacc
gatgtggcggccaggggcctggacattgaaaatgtcagccatgttataaactacgatatt
ccgcaggatccggaggtttacgtccacaggatagggcgtacgggccgggccggtaggagt
ggtaaagctattaccttcatagtccccgaagaatacaggcagttaaggttgattgaaaaa
atcattggggccaggatagcccgaaaaaacctgccttctattgccgatatatttgaacgg
caaaaggtgcaaatgattgacaaggtagccaacaccattaacggcggacagttggacatt
taccgggacattgtgcaggaattggctgcagattataatctcatagacatagccagcgct
gccttgaaactggctttggatctggaactgcccgccaaggaaattgaagtagatgaggca
gactttggtgagacaggagcccgcccggggatggtcaggttgtttatgaatataggacga
caggaggaaatgaccccgccggaaattatcaaacttatagcggaagaagctgctattccc
gggaaatcaatcggggccatcaggatattcgacaggttttcttttgtggaagttccccaa
caggtagcggaacaagtgatgtattcgctgcataaaaccgaagtcaaggggaagaagctt
tttgttgaaccggcaaaggtgcgcaagtaa
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