KEGG   Thermincola potens: TherJR_1553
Entry
TherJR_1553       CDS       T01226                                 
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
tjr  Thermincola potens
Pathway
tjr03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:tjr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    TherJR_1553
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tjr03400]
    TherJR_1553
Enzymes [BR:tjr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TherJR_1553
DNA repair and recombination proteins [BR:tjr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     TherJR_1553
SSDB
Motif
Pfam: LigD_Prim-Pol DUF4505
Other DBs
NCBI-ProteinID: ADG82406
UniProt: D5XFI5
LinkDB
Position
complement(1618984..1619889)
AA seq 301 aa
MTCQIVQIEEREVRLTNLEKEMWPDGYTKADLIKYYVDMSPYILPYIKNRLFIMSRYPDG
ITGKMFYQKDAPEYTPEWVRTYPLVSERENKVVNYIVCDDLPTLVWLANQACIELHIWMA
QKERLDYPDIVVFDLDPFPPATFKDTLDVAMLVKEALDRFGLQGYPKTSGSTGLHIFLPV
RPEFTYAQVREGVRFLFEHIHAVYPEKTTLERSIDKRAGKVYLDYGQNTRGHTMTFHYSL
RPHPGAPVSTPLTWDEVRAGDIEPEDFNIKTIFPRIAKVGDLYRPLLHREQSFAGLLTLV
T
NT seq 906 nt   +upstreamnt  +downstreamnt
ttgacctgtcagatcgtacaaatagaagagagagaagtgcgcttaacaaatttggaaaag
gaaatgtggcccgatggttatacaaaagctgatttgataaagtattatgtagatatgtcc
ccttacattcttccttatatcaaaaacaggctctttattatgagccgttaccctgacgga
atcaccggaaaaatgttttaccaaaaagacgctccggaatacacgcccgaatgggtgcga
acctatccgctggtttcggaacgtgagaataaagtagtcaattacattgtttgtgatgac
ttgcctaccttagtatggcttgcgaaccaggcctgtatagaactgcatatttggatggct
cagaaggaaaggctggactacccggacattgtggtgtttgatttagatccttttcccccg
gctacttttaaggatacattggatgtggctatgttggttaaagaagccctggaccggttt
ggtctccaagggtatccgaaaacatcaggttctacgggactgcatatttttcttcctgtg
cggcctgaatttacttatgcccaggtaagagaaggggtcaggtttttatttgaacacata
catgctgtttacccggaaaaaacaacgctcgaacggtctatagacaaacgggcaggtaaa
gtatatctggattacggtcagaataccaggggccacactatgacctttcattacagcctg
cgaccgcaccccggagcgccggtttccactccgttgacgtgggatgaggtccgggccggc
gatattgaaccagaagattttaacatcaaaactatttttccacggattgcaaaagtgggt
gatttgtatcgtcctttactgcaccgggaacagtctttcgcagggcttttgacattagtc
acgtaa

DBGET integrated database retrieval system