Thermincola carboxydiphila: TherJR_1798
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Entry
TherJR_1798 CDS
T01226
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tjr
Thermincola carboxydiphila
Pathway
tjr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tjr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
TherJR_1798
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tjr03400
]
TherJR_1798
Enzymes [BR:
tjr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TherJR_1798
DNA repair and recombination proteins [BR:
tjr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
TherJR_1798
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PriA_3primeBD
DEAD
ResIII
PriA_C
Helicase_C
Zn_ribbon_PriA
SLFN-g3_helicase
AAA_30
ATPase_2
AAA_19
AAA_16
nSTAND_NTPase5
Zot
ELL
AbiEi_4
PIF1
Zn_ribbon_6
ADDB_N
WHD_PriA_bact
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
ADG82647
UniProt:
D5X7S7
LinkDB
All DBs
Position
complement(1847138..1849627)
Genome browser
AA seq
829 aa
AA seq
DB search
MYAEVVVNLLNRKLDRVFHYSIPSALEKRLREGMQVLVPFGPQTVDGYVVGLTETAEVEK
TRDVLEIVEEEPVFSREMLALARWMSKTYLCTMVDALHVVMPPGLKLRSKKFLSLNNPDA
DLKNKIFAKIMTGADTELKDKVAAVLELLSVRGKAEIKSLEQQYGKKPVEYLARILKENG
WGEVNTRFAAKARKKKVKQVMLPENERDDIEELIHNLALKAPKQAEVLKILASDSPVTLP
ELKEMGCSPTAVHALQEKGLIKIEEIEDIRDPFQECRPVEYEPPKQLTSEQAEVLADISC
SIERGTSDVFLLHGATGSGKTEVYLQAIDKALIMGKQAIFLVPEIALTPQMVQRVRGRFG
EKVAVLHSALSLGERFDQWRQIKEGAVQVVVGARSAVFAPVPKLGLIIVDEEHESTYKQE
ENPKYHAREVAIYRSRMAGCPVILGSATPSVESYYLAREGKYKLKTMPNRIGNRPMPEVH
IVDLRREMEQGNRSIFSSRLQEEIAAVLQKKEQIILFLNRRGYSTFVVCRDCGFVVKCRY
CNISLTYHAHGEKMICHYCGYKAKVPQVCPVCRSKHIRYFGLGTQRVEDEIKKLFPQARV
LRMDVDTTSRKGAHEKILTDFAAGKADILIGTQMIAKGLDFPKVTLVGVISADTSLNLPD
FRAAERTFQLLTQVAGRAGRAGAPGKVIVQTYAPAHYSVRTAQKHDFPGFYGIEIETRRE
MEYPPFSRLLRIVISGFDENKVIRAAHILAENVQAQLRGVEERLEQPLLGPAPAPLTKLR
NKYRWQLCIKAKNRKVFGPLVDSALYKSGLREQFNDLKFNVEIDPQSLL
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
ttgtatgccgaggttgttgtcaaccttttgaaccggaaactggacagggtatttcattat
tctatcccttccgccctggaaaagcgtctgcgggaaggcatgcaggtactggttcctttt
ggcccccagactgttgacggatacgtggtcggtctcacggaaacagcggaggtagaaaaa
accagagatgttttggaaattgtggaagaggaacctgtcttcagccgggaaatgctggct
ttagcccgttggatgtctaaaacctacctttgtaccatggttgatgccctgcatgtggtt
atgcctcccggattgaaactgcgtagcaaaaagtttctgtccttaaacaaccctgacgcc
gatttgaaaaataaaatatttgccaaaataatgaccggagccgatactgaattgaaggat
aaggttgccgctgttctggaacttttatctgtccggggcaaggcagaaatcaaatcactg
gaacagcaatacggtaaaaagccggtggaatacctggcaaggattttaaaggaaaatggc
tggggcgaggtaaacacccggtttgcggcgaaagcccgcaaaaaaaaggtgaaacaggta
atgttgcctgaaaacgaaagagatgatatcgaagaactcatccataatctggccttgaaa
gctccgaaacaggcagaagtcttgaaaatactggcttccgattcgcctgtcacactgccc
gaattgaaggaaatgggctgttcgcctacggctgtgcacgctcttcaggaaaaagggcta
attaagatagaagaaatagaagatatccgtgacccttttcaggaatgccggcctgtggaa
tatgaaccgcctaaacaactgacttcagagcaggcggaagtattagctgatatcagttgt
agtattgaacgtggaacctctgatgttttcctgctgcatggagctacgggaagcggcaaa
acagaagtttatttgcaagccattgacaaggcactcattatgggcaaacaggccattttt
cttgtcccggagatagcccttacccctcaaatggtgcagcgtgtgcggggaaggtttggg
gaaaaagtggctgttttacacagcgctttatcgttgggtgagcggtttgaccagtggcgg
cagattaaagagggcgcagttcaggtggtggtaggcgcccgttcagccgtttttgccccg
gtgccaaaattaggtctgattattgtagacgaagaacacgaaagtacatataagcaagaa
gaaaatcccaagtaccatgcccgggaggtggccatttaccggtccagaatggccggatgt
ccggttatcctgggcagcgctaccccttccgttgaaagttattatctcgcccgggaaggt
aaatataaattaaagacgatgcctaacaggatcggcaaccggccgatgccggaagtacat
atagtggacttgcgccgggaaatggaacagggcaacaggtccatattcagcagccggctg
caggaagaaattgcagcggttctgcagaaaaaggaacaaatcatcctgtttttgaaccgg
cgcggatattcaacctttgttgtgtgccgggattgcggttttgtcgttaaatgcaggtac
tgcaatatttctttaacttatcatgcccatggagaaaaaatgatttgtcattactgtggt
tacaaagccaaagtgccccaggtgtgcccggtctgccgcagcaagcatatccggtatttt
ggcctgggaacacaaagggtggaggatgaaataaaaaaactttttccgcaagcccgtgtg
ctgagaatggatgtggatactacttcccggaaaggagcccatgaaaaaatcctgacggat
tttgctgcgggcaaggcggatatcttaattggcacccagatgattgctaaagggcttgat
tttcccaaagtgaccctggtgggcgtcattagcgccgatacttctctcaacctgcctgac
tttcgggcagccgagagaaccttccagttgttaactcaggtggccgggcgtgctgggaga
gctggtgccccggggaaggtaattgtgcagacctatgcccctgctcattacagtgtccgg
acagcccaaaaacatgattttcccgggttttatgggatagagatagagaccaggcgggaa
atggagtatcctcctttctcgcgattgctgcgcatagtaataagtggttttgatgaaaat
aaagttatccgggcagcccatatattggcggaaaatgtgcaagcgcagctccgcggcgtg
gaagaaaggctggaacagcctttactgggtccggcgccggcgccgttgacaaaattaaga
aacaaataccggtggcagttatgcataaaggccaaaaaccgtaaggtgttcggcccgttg
gtggacagtgcgctttacaaatcagggctgcgtgaacagtttaatgatttaaaatttaat
gtagagatagatccgcaaagtttactttaa
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