Thermincola potens: TherJR_2713
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Entry
TherJR_2713 CDS
T01226
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
tjr
Thermincola potens
Pathway
tjr02020
Two-component system
tjr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tjr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
TherJR_2713
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TherJR_2713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tjr03021
]
TherJR_2713
Transcription machinery [BR:
tjr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TherJR_2713
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
Sigma70_r4
Sigma70_r4_2
HTH_IclR
HTH_23
HTH_17
HTH_Crp_2
HTH_21
HTH_3
HTH_Tnp_ISL3
LacI
HTH_AsnC-type
HTH_20
HTH_31
HTH_AraC
Phage_CII
Motif
Other DBs
NCBI-ProteinID:
ADG83548
UniProt:
D5XC96
LinkDB
All DBs
Position
complement(2821097..2822473)
Genome browser
AA seq
458 aa
AA seq
DB search
MRIGYGIFQEQTQKLMMTPELRLAIKILQYSATELAEYIQQELAENPVLDIKEEENVLEE
PAAEDKYDIDWQEYFADTSDLGLPTTGREEKEEFYYEHILSKAPTLQEHLNFQLCLTELT
DLQRKICEYLIGNIDEAGYLQVGLEEAAFKFGLSCGEVEKALRIIQTFEPYGVGARNLSE
CLLIQAENLKLLNPVLSQVIEQYLPELARGKLAKIAQEMNVSVQDIQKAFDIIKTLDPKP
GRRFSGTNDVRYIVPDLIIERVDGEYVVIVNDTAVPRLVINGSYRDILKNETGEAARKFI
EEKLNSAAWLIRSIEQRRLTLYKIARCLVELQKDFLDYGVRRLKPLTLKQVAERVGVHES
TVSRATANKFAQTPQGLVELKFFFAHGVENSTGGMVSAESIKKQITEMIAHEDEANPLSD
QKICDRLNLQGIKISRRTVAKYRDELGIPQASVRKRYE
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgcgtataggatatgggatttttcaggaacaaacccaaaagttaatgatgactcccgaa
ttgcggttagctatcaaaatcctccagtattccgccacggagctggctgaatatattcaa
caggaattggcggagaatcctgttttggacatcaaagaagaggagaatgtgctggaggaa
cctgccgctgaggataaatatgatattgactggcaggaatattttgccgatacaagtgac
cttggcttaccgaccaccggtcgggaagaaaaggaagaattttattatgaacatatatta
agtaaagctcctacactacaggaacacctaaactttcagctctgtctgactgaacttaca
gatttgcagagaaaaatatgtgagtacctgatcggtaacattgatgaagcaggttatttg
caggtcgggctggaagaggcggcctttaagtttggcctttcctgcggtgaagttgaaaag
gcattacgtatcatacaaacctttgagccttatggggtgggagccaggaacctgtccgag
tgcctgctgatccaggcggaaaacctgaaattgctcaatcccgtactcagccaggtcatc
gaacagtatcttccggaactggccaggggcaaactggcaaaaattgcccaggaaatgaat
gtaagtgtacaggatattcaaaaggcctttgatattattaaaacccttgaccccaaaccg
ggacgccgattttccggcaccaatgatgtgcgttacattgttcccgatctaataattgag
cgggttgacggggaatacgtagtcattgtcaatgatactgctgttcccaggttggttata
aacggctcttaccgcgatattctaaaaaatgaaacaggggaagcagccagaaaatttatt
gaggaaaaacttaattcggcagcctggttaatcaggagtatagaacagagaaggcttact
ctttacaaaattgccaggtgtctggtggagttgcagaaggatttcctggattacggcgtc
aggcggctgaaacctttaactttgaagcaggttgccgagcgggtaggggtgcatgaatct
accgtaagcagggccacagccaacaaatttgcgcaaactccccagggtttggttgaattg
aaattcttttttgcgcatggtgttgaaaacagtaccggtggcatggtctctgcagaaagt
ataaaaaaacagattacagagatgattgcccatgaagatgaggcaaatcccttaagtgac
caaaagatttgcgaccgtttgaatttgcaaggtatcaaaatttcccgccggacagtggcc
aaatacagggatgagctgggaataccccaggcgtcagtccgtaagagatatgaataa
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