KEGG   Thermoanaerobacter kivui: TKV_c11660
Entry
TKV_c11660        CDS       T03397                                 
Symbol
rnjA
Name
(GenBank) ribonuclease J 1
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
tki  Thermoanaerobacter kivui
Pathway
tki03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tki00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TKV_c11660 (rnjA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tki03019]
    TKV_c11660 (rnjA)
Messenger RNA biogenesis [BR:tki03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     TKV_c11660 (rnjA)
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1 Lactamase_B_6
Other DBs
NCBI-ProteinID: AIS52337
UniProt: A0A097ARA2
LinkDB
Position
1125345..1127009
AA seq 554 aa
MANKAKLKIIPLGGLNEIGKNMTVFEFGNDIIVVDCGLAFPDDEMLGIDLVIPDITYLLK
NREKVRAIVLTHGHEDHIGALPYVLKQLNVPVYGTRLTLGLVEYKLKEHGILKDSKLITE
RPREIVEIGQFKVEFIRTSHSIADSAALAIHTPVGTVFHSGDFKIDFTPIGGEIADLHRF
AQLGEKGVLVMLCDSTNIERPGYTMSERTVGETFDNLFRKAEQRIIVATFASNIHRVQQI
IDSAYKYGRRVAISGRSMLNVVNVAVELGYLLIPDGLLVDIDEANKLPHDRVVIITTGSQ
GEPMSALTRMASSEHKKVEIVPGDTVIISASAIPGNEKLISRVINQLFKKGANVIYEALA
DIHVSGHACQEEIKLLHTLIKPKFFIPVHGEYRHLVQHAKLAETLGMPPQNIFVVDNGTV
LEFTKNSGRVAGTVTAGKVLVDGLGVGDVGNIVLRDRKHLAQDGLLVVVVTISKETGSLI
AGPDIISRGFVYVRESEDLMEESKNIVREVLAKCEKEEINEWSAIKSMIKDNLSSFLYEK
TKRNPMILPIIMEI
NT seq 1665 nt   +upstreamnt  +downstreamnt
ttggcaaacaaggcaaaactcaaaataataccattgggcggtttaaatgagatcggcaaa
aacatgactgtttttgagttcgggaatgacattatagtggttgattgcggtctcgctttt
cctgatgatgagatgttgggaatagacctcgtcattcctgacattacttatttgttgaaa
aatcgtgaaaaagtgagggctattgttctcactcatggtcatgaagaccacattggagct
ttaccttatgttctaaaacagcttaatgttccggtgtacggcactcgcttaacattaggt
ttggtagaatataagttgaaggagcacggcattttaaaagatagtaaattgataacggaa
agacccagggagattgtggaaattggccaatttaaagtagagttcataaggacttctcac
agcatagcagattcggctgctcttgcaatccacactcctgtcggaacagtgtttcactca
ggggattttaaaatagactttactcctataggaggagaaattgcagacttacaccgtttt
gcacagttaggggaaaaaggagtacttgtaatgctgtgtgacagcacgaacattgaacga
cccggttataccatgtcagaaaggacggttggagaaacttttgacaatctttttagaaaa
gcagaacagcgcattatagttgcgacctttgcttccaatattcacagagtacagcaaatt
atagactctgcctacaaatatggaagaagggttgctatttctggcagaagtatgttaaat
gtggtcaatgtagcagtagaattagggtatttgcttatccctgatgggcttttagtagat
attgatgaagctaataaactgccccatgacagagttgttatcataaccaccggaagccaa
ggagaacctatgtctgctcttacaagaatggcttcttctgagcataaaaaagtagagatt
gtaccgggagatacagtgataatttctgcttctgctattccgggaaatgaaaaacttatt
tctcgcgtcatcaaccaattatttaaaaaaggtgccaatgtaatttatgaagcattggca
gatattcatgtatcgggtcacgcttgtcaagaagagattaagctacttcatacattaata
aaacctaaatttttcattcctgttcatggagaatacagacatttagttcagcatgctaag
cttgcagagactttaggaatgcctccccaaaatatctttgtagtagataatgggacggta
ttagagtttacgaaaaattctggcagagttgcaggtacagtcacagcgggtaaagtatta
gtagatggtcttggggtaggagatgtaggaaatatcgtcttaagagacagaaaacatttg
gcacaagatggattattagtagtagtagttaccatatccaaagaaactggcagtctcatt
gcaggccccgacataatttcaaggggatttgtatatgtgagagaatctgaagatttaatg
gaggaatccaaaaatatcgttagagaagtgctggcaaagtgcgaaaaagaagagattaat
gaatggtctgctataaaatcaatgataaaagacaatttaagcagttttctgtatgaaaag
accaagcggaatcccatgatattgccaattataatggagatttaa

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