Thioalkalivibrio sp. K90mix: TK90_0096
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Entry
TK90_0096 CDS
T01174
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
tkm
Thioalkalivibrio sp. K90mix
Pathway
tkm03420
Nucleotide excision repair
tkm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tkm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TK90_0096
03430 Mismatch repair
TK90_0096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tkm03400
]
TK90_0096
Enzymes [BR:
tkm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TK90_0096
DNA repair and recombination proteins [BR:
tkm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TK90_0096
MMR (mismatch excision repair)
Other MMR factors
TK90_0096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Motif
Other DBs
NCBI-ProteinID:
ADC70613
LinkDB
All DBs
Position
complement(102693..104900)
Genome browser
AA seq
735 aa
AA seq
DB search
MDVSPLLDSLNPAQREAVAAPPQPLLVLAGAGSGKTRVLVHRIAWLIGVEGVAPHSLLAV
TFTNKAAAEMRGRIEALLGHPATGLWVGTFHGLAHRLLRQHWQDARLPQGFQILDSDDQL
RMVKRVLRGLELDEARWPPKQAQWYINARKDEGARPEHLPDTGDPVARQWVRIYTTYQQA
CERAGVVDFAELMLRSLELLRDNKALLEHYRTRFRHVLVDEFQDTNDIQYAWLRLLAGDS
PVFAVGDDDQSIYGWRGARIENIQHFQQDYPGTQVVRLEQNYRSSANILNAANALIRHNA
GRLGKELWTEDKEGAPVRLYTALNEQEEARFIAETIARHVDEGGLYRECAVLYRSNAQSR
VLEETFIARRMPYRVYGGLRFFERQEIRDALAYLRLAGNGDDDAAFLRVVNQPPRGIGEK
TLEGLRQAAQAADTSLLQAATHAVDADALPGRARNAVAGFVQLVRTLQQELPRQPLADQV
EQAIERAQLREHYKKEKGERGEARLENLDELVGAARAFDMESTAESEEGEGNRLTEFLAH
AALEAGEGAADPHEDAVQMMTLHSAKGLEFPLVFLTGMEEGLFPNARSLEEPGRLEEERR
LAYVGMTRAEKELYLIHAETRRLYGRESYNVASRFINEIPEDALEVLRPQASPFGAGRFA
AARQKTAGFGSMDVQAAEASAAGLAIGARVHHAKFGEGLITQFEGSGNSARVQVNFAHAG
SKWLVLGFAKLEVLS
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atggatgtctcccccctgctcgattccctgaacccggcccagcgcgaggccgtggccgcc
cctccacagccgctgctggtgctggccggcgccggctccggcaagacccgcgtgctggta
caccgcatcgcctggctgatcggtgtcgagggcgtggccccgcacagcctgctggcggtc
accttcaccaacaaggcggcggccgagatgcgcgggcgcatcgaggcgctgctgggccac
ccggcgaccggattgtgggtcggtacgttccacgggctggcccaccgcctgctgcgccag
cactggcaggacgcgcggctgccgcagggcttccagattctcgactccgacgaccagctg
cgcatggtcaaacgtgtgctgcgcggcctggaactggacgaggcgcgctggccaccgaag
caggcgcagtggtacatcaacgcgcgcaaggacgagggcgcccgcccggagcaccttccg
gataccggtgacccggtcgcgcgccagtgggtgcgcatctacaccacctaccagcaggcc
tgcgagcgtgccggcgtggtggacttcgccgagctgatgctgcgctcgctggagctgctg
cgcgacaacaaggcgctgctggagcactaccgcacgcgctttcgccatgtgctggtcgac
gagttccaggacaccaacgacatccagtacgcctggctgcgcctgctggccggcgacagc
ccggtgttcgcggtgggtgacgacgatcagtccatctacggctggcgcggcgccaggatc
gagaacatccagcatttccagcaggactacccgggcacccaggtcgtacgcctggagcag
aactaccgctccagcgccaacatcctgaacgcggccaacgccctgatccggcacaacgcc
gggcgcctcggcaaggagctctggaccgaggacaaggagggagcaccggtccgcctgtac
accgcgctgaacgagcaggaagaggcacgcttcatcgccgagaccatcgcccgccacgtg
gacgagggcgggctgtaccgcgagtgcgcggtgctctatcgctccaacgcccagtcgcgc
gtactggaagagaccttcatcgcccgccgcatgccctatcgcgtctacggcggcctgcgc
ttcttcgagcgccaggagatccgtgacgccctggcctacctgcgcctggccggcaacggc
gatgacgacgccgccttcctgcgcgtggtcaaccagccgccgcgcgggatcggcgaaaag
accctggagggcctgcgccaggccgcccaggcggcggataccagcctgctgcaggccgcc
acccacgcggtggatgccgacgcgctgcccgggcgggcgcgcaacgcggtcgccggcttc
gtgcagctggtccgcaccctgcagcaggagctgccgcgccagccgctggcggaccaggtg
gaacaggcgatcgagcgcgcgcaactgcgcgagcactacaagaaggaaaagggcgagcgc
ggcgaggcgcggctggagaacctggacgagctggtgggggccgcgcgcgccttcgacatg
gagtccaccgccgagagcgaggaaggcgaagggaaccgtctgacggaattcctcgcccat
gcggcgctggaggccggcgagggtgcggccgatccgcatgaagacgcagtgcagatgatg
accctgcactcggccaagggcctggagttcccgctggtattcctcaccggcatggaggag
ggcctgttccccaacgcgcgttcgctggaggaaccgggacggctggaggaggaacgccgc
ctggcctacgtcggcatgacccgcgccgagaaggagctgtacctgatccacgccgagacc
cggcggctgtacggacgcgagtcctacaacgtcgcctcacgcttcatcaacgagatcccg
gaggacgcgctggaggtgctgcgcccgcaggcctcgccgtttggtgcgggacgctttgcg
gcggcgcgccagaagaccgcgggattcgggtccatggatgtgcaggccgccgaggcctcc
gcggcgggcctggccatcggcgcgcgcgtgcatcacgcaaagttcggcgagggcctgatt
acccagttcgagggttccggcaactcggcccgggtccaggtgaacttcgcccacgccggt
tccaagtggctggtgctcggcttcgccaaactggaagttctgagttag
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