Thioalkalivibrio sp. K90mix: TK90_0263
Help
Entry
TK90_0263 CDS
T01174
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tkm
Thioalkalivibrio sp. K90mix
Pathway
tkm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tkm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TK90_0263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tkm03021
]
TK90_0263
Transcription machinery [BR:
tkm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TK90_0263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF2570
HTH_20
TMPIT
Motif
Other DBs
NCBI-ProteinID:
ADC70778
LinkDB
All DBs
Position
complement(270287..272176)
Genome browser
AA seq
629 aa
AA seq
DB search
MNREEQQSQLKELIAKGKEQGYLTYTEVNDHLPDSIIDSDQVEDIIAMINDMGIAVHEQA
PDADSLLLSDGSVSADEDAEDAVAALASADSDFGRTTDPVRMYMREMGTVELLTREGEIR
IAKRIEEGLMQVLFALAHHPGAIEHLIREYDQIVENNGRLTDLVVSFIDPKNPLDGEAVA
RGLVSPEDAQKAEEAQKAAAAEASPELDAIVEEVEDAEEEDAEPVDTGPDPEEARERFNK
LRKLHAKAHKAFEKGDRKAYATAREATAKYFMEFKLVPRMVDQLTTKLHGTIDRIRSHER
RIMELAVNQAQMPRKSFIDSFPKNETNLDWIKQACKAKGKYTTALAEHEDEIVRLQKKLA
EIEHEASLNISEIKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLI
QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNR
VSRQMLQEMGREATPEELAERMEMPEDKIRKVLKISKEPISMETPIGDDEDSHLGDFIED
EKVASPSDSAARESLSEATREILSTLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRE
RIRQIEAKALRKLRHPTRAELLRTYTDAE
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgtgaagagcaacaatcccagctcaaggaactgattgccaagggcaaggagcag
ggatacctcacgtataccgaggtcaacgaccacctgcccgactcgatcatcgactccgac
caggtcgaggacatcattgcgatgatcaacgacatgggcatcgcggtgcacgagcaggcc
ccggacgccgacagcctgctgttgtccgatggctccgtctccgccgacgaggacgccgaa
gacgccgtggccgcgctcgcctcggccgattccgatttcggtcgcaccaccgaccccgtg
cgcatgtacatgcgcgagatgggcacggtcgaactgctgacccgcgaaggcgagatccgc
atcgccaagcgtatcgaagagggcctgatgcaggtcctgttcgcgctcgcccatcacccg
ggcgcgatcgaacacctgatccgcgagtacgaccagatcgtcgagaacaacggccgtctg
accgatctcgtggtctccttcatcgacccgaagaacccgctggatggcgaagccgtcgcg
cgcgggctggtctccccggaagacgcccagaaggccgaggaagcccagaaggccgcggcc
gccgaggcctcgccggagctggacgcgatcgtggaagaggtcgaagacgccgaggaagaa
gacgccgaaccggtggacaccggccccgacccggaagaggcgcgcgagcgcttcaacaag
ctgcgcaagctgcacgccaaggcgcacaaggccttcgaaaagggcgaccgcaaggcctac
gccaccgcgcgcgaggccaccgccaagtacttcatggagttcaagctggtgccgcgcatg
gtggaccagctgaccaccaagctgcacggcaccatcgaccgcatccgcagccatgagcgc
cgcatcatggaactggccgtgaaccaggcgcagatgccgcgcaagtcgttcatcgacagc
ttcccgaagaacgagaccaacctcgactggatcaagcaggcctgcaaggccaagggcaag
tacaccactgccctggccgagcacgaggacgagatcgtgcgcctgcagaagaaactcgcc
gagatcgaacacgaggccagcctgaacatctccgagatcaaggagatcaaccgccgcatg
tccatcggcgaggccaaggcccgccgcgcgaagaaggagatggtcgaggccaacctgcgc
ctggtgatctccatcgccaagaagtacaccaaccgcggcctgcagttcctcgacctgatc
caggaaggcaacatcggcctgatgaaggccgtggacaagttcgaataccgtcgcggctac
aagttctcgacctacgccacctggtggattcgccaggccatcacccgctccatcgcggac
caggcccggaccatccgcatcccggtgcacatgatcgagacgatcaacaagctcaaccgc
gtctcccgccagatgctgcaggagatgggccgcgaggccacgccggaagagctggccgaa
cgcatggagatgcccgaggacaagatccgcaaggtgctcaagatctccaaggaaccgatc
tccatggagaccccgatcggcgacgacgaagactcccacctgggcgacttcatcgaagac
gagaaggtcgcctcgccatccgactccgccgcgcgcgagagcctgtccgaggccacccgc
gagatcctgtccacgctgaccccgcgcgaggccaaggtcctgcgcatgcgcttcggcatc
gacatgaacaccgaccacaccctcgaggaagtcggcaagcagttcgacgtcacccgcgag
cgcatccgccagatcgaggccaaggccctgcgcaagctgcgtcacccgacccgcgccgaa
ctgctgcgcacctacaccgacgccgaataa
DBGET
integrated database retrieval system
